RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TMCO5BA8MYB1 307 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 RFC4P35249 363 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 COPB2P35606 906 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 FXR2P51116 673 aaKnown RBP eCLIP20.22■□□□□ 0.83
CCDC3-201ENST00000378825 ASIC2Q16515 512 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 KRT79Q5XKE5 535 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 SCFD2Q8WU76 684 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 CCDC114Q96M63 670 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 BCAS3Q9H6U6 928 aa20.22■□□□□ 0.83
CCDC3-201ENST00000378825 NOC2LQ9Y3T9 749 aaKnown RBP20.22■□□□□ 0.83
CCDC3-201ENST00000378825 TTI1O43156 1089 aa20.21■□□□□ 0.83
CCDC3-201ENST00000378825 RAPGEF5Q92565 580 aa20.21■□□□□ 0.83
CCDC3-201ENST00000378825 TRAPPC3O43617 180 aa20.21■□□□□ 0.83
CCDC3-201ENST00000378825 CDK8P49336 464 aa20.21■□□□□ 0.83
CCDC3-201ENST00000378825 CASP5P51878 434 aa20.21■□□□□ 0.83
CCDC3-201ENST00000378825 SMTNP53814 917 aa20.21■□□□□ 0.83
CCDC3-201ENST00000378825 MAGOHP61326 146 aaKnown RBP20.21■□□□□ 0.83
CCDC3-201ENST00000378825 ADAT2Q7Z6V5 191 aaKnown RBP20.21■□□□□ 0.83
CCDC3-201ENST00000378825 MAGOHBQ96A72 148 aaKnown RBP20.21■□□□□ 0.83
CCDC3-201ENST00000378825 EDEM3Q9BZQ6 932 aa20.21■□□□□ 0.83
CCDC3-201ENST00000378825 RIC8AQ9NPQ8 531 aa20.21■□□□□ 0.83
CCDC3-201ENST00000378825 SNED1Q8TER0 1413 aa20.21■□□□□ 0.83
CCDC3-201ENST00000378825 ZBTB48P10074 688 aaPredicted RBP20.2■□□□□ 0.82
CCDC3-201ENST00000378825 DDR1Q08345 913 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 TMEM119Q4V9L6 283 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 RC3H1Q5TC82 1133 aaKnown RBP20.2■□□□□ 0.82
CCDC3-201ENST00000378825 PPP4R3AQ6IN85 833 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 GJB7Q6PEY0 223 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 CCDC121Q6ZUS5 278 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 IRF2BP2Q7Z5L9 587 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 SPATS2Q86XZ4 545 aaKnown RBP20.2■□□□□ 0.82
CCDC3-201ENST00000378825 LRRC57Q8N9N7 239 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 RBM46Q8TBY0 533 aaKnown RBP20.2■□□□□ 0.82
CCDC3-201ENST00000378825 SCFD1Q8WVM8 642 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 HAS1Q92839 578 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 USP11P51784 963 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 KCNH2Q12809 1159 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 VPS72Q15906 364 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 TMEM266Q2M3C6 531 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 IRS2Q9Y4H2 1338 aa20.2■□□□□ 0.82
CCDC3-201ENST00000378825 FAM196AQ6ZSG2 479 aa20.19■□□□□ 0.82
CCDC3-201ENST00000378825 CEP57Q86XR8 500 aa20.19■□□□□ 0.82
CCDC3-201ENST00000378825 LRRC47Q8N1G4 583 aaKnown RBP20.19■□□□□ 0.82
CCDC3-201ENST00000378825 SYN2Q92777 582 aaPredicted RBP20.19■□□□□ 0.82
CCDC3-201ENST00000378825 SEC16BQ96JE7 1060 aa20.19■□□□□ 0.82
CCDC3-201ENST00000378825 TRIM51Q9BSJ1 452 aa20.19■□□□□ 0.82
CCDC3-201ENST00000378825 AIPL1Q9NZN9 384 aa20.19■□□□□ 0.82
CCDC3-201ENST00000378825 MYH7BA7E2Y1 1941 aa20.19■□□□□ 0.82
CCDC3-201ENST00000378825 GOLGA6L7A0A1B0GV03 622 aa20.19■□□□□ 0.82
CCDC3-201ENST00000378825 SETQ01105 290 aaPredicted RBP20.19■□□□□ 0.82
CCDC3-201ENST00000378825 HERC4Q5GLZ8 1057 aaPredicted RBP20.19■□□□□ 0.82
CCDC3-201ENST00000378825 UBAP2Q5T6F2 1119 aaKnown RBP20.19■□□□□ 0.82
CCDC3-201ENST00000378825 DHX37Q8IY37 1157 aaKnown RBP20.19■□□□□ 0.82
CCDC3-201ENST00000378825 KRIT1O00522 736 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 ADAM9Q13443 819 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 PROM2Q8N271 834 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 GPCPD1Q9NPB8 672 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 PCDHA2Q9Y5H9 948 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 POTEB3A0JP26 581 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 POTECB2RU33 542 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 ECM2O94769 699 aaPredicted RBP20.18■□□□□ 0.82
CCDC3-201ENST00000378825 E2F5Q15329 346 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 ANKRD20A8PQ5CZ79 823 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 SPTY2D1Q68D10 685 aaPredicted RBP20.18■□□□□ 0.82
CCDC3-201ENST00000378825 DPY19L2P1Q6NXN4 242 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 POTEBQ6S5H4 581 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 KCTD10Q9H3F6 313 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 NAGPAQ9UK23 515 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 KIAA1024Q9UPX6 916 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 CHUKO15111 745 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 EPS15P42566 896 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 PPP2R2AP63151 447 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 CYB5D1Q6P9G0 228 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 PAXIP1Q6ZW49 1069 aaPredicted RBP20.18■□□□□ 0.82
CCDC3-201ENST00000378825 FUKQ8N0W3 1084 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 CNBD1Q8NA66 436 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 IKZF4Q9H2S9 585 aa20.18■□□□□ 0.82
CCDC3-201ENST00000378825 LUC7LQ9NQ29 371 aaKnown RBP20.18■□□□□ 0.82
CCDC3-201ENST00000378825 STAT3P40763 770 aa20.17■□□□□ 0.82
CCDC3-201ENST00000378825 DHX9Q08211 1270 aaKnown RBP20.17■□□□□ 0.82
CCDC3-201ENST00000378825 GRAPQ13588 217 aa20.17■□□□□ 0.82
CCDC3-201ENST00000378825 KRT71Q3SY84 523 aa20.17■□□□□ 0.82
CCDC3-201ENST00000378825 TRAPPC3LQ5T215 181 aa20.17■□□□□ 0.82
CCDC3-201ENST00000378825 ALKBH5Q6P6C2 394 aaKnown RBP20.17■□□□□ 0.82
CCDC3-201ENST00000378825 GRAPLQ8TC17 118 aaPredicted RBP20.17■□□□□ 0.82
CCDC3-201ENST00000378825 SCLT1Q96NL6 688 aa20.17■□□□□ 0.82
CCDC3-201ENST00000378825 ROBO3Q96MS0 1386 aa20.17■□□□□ 0.82
CCDC3-201ENST00000378825 PPP1R11O60927 126 aaPredicted RBP20.17■□□□□ 0.82
CCDC3-201ENST00000378825 LRIG3Q6UXM1 1119 aa20.17■□□□□ 0.82
CCDC3-201ENST00000378825 TMC3Q7Z5M5 1100 aa20.17■□□□□ 0.82
CCDC3-201ENST00000378825 TPCN2Q8NHX9 752 aa20.17■□□□□ 0.82
CCDC3-201ENST00000378825 SPAG5Q96R06 1193 aa20.17■□□□□ 0.82
CCDC3-201ENST00000378825 LZTS2Q9BRK4 669 aa20.17■□□□□ 0.82
CCDC3-201ENST00000378825 PGRMC1O00264 195 aaKnown RBP20.16■□□□□ 0.82
CCDC3-201ENST00000378825 SHBGP04278 402 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 CCDC172P0C7W6 258 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 UCHL3P15374 230 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 ADCY7P51828 1080 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 GPSM2P81274 684 aa20.16■□□□□ 0.82
CCDC3-201ENST00000378825 C1orf131Q8NDD1 294 aaKnown RBP20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms