RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 MTA3Q9BTC8 594 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 ANO3Q9BYT9 981 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 INO80BQ9C086 356 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-203ENST00000372407 SEPT10Q9P0V9 454 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 CLGNO14967 610 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 SORBS3O60504 671 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 SAT1P21673 171 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 ABCD1P33897 745 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 MCAMP43121 646 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 DIXDC1Q155Q3 683 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 MUM1L1Q5H9M0 696 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 ACTR5Q9H9F9 607 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-203ENST00000372407 ADAM21Q9UKJ8 722 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 ANO9A1A5B4 782 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 LGALS16A8MUM7 142 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 GOLGA8SH3BPF8 625 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 SERPINB6P35237 376 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 TERF2Q15554 542 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 ERFEQ4G0M1 354 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 GLE1Q53GS7 698 aaKnown RBP12.35□□□□□ -0.43
PTPRF-203ENST00000372407 DNAJC24Q6P3W2 148 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 SPON1Q9HCB6 807 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 STK36Q9NRP7 1315 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 MCF2LO15068 1137 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 PLEKHA8P1O95397 391 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 SLC7A5Q01650 507 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 SATB1Q01826 763 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 ADCY1Q08828 1119 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 CUL4BQ13620 913 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 E2F5Q15329 346 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 SLFNL1Q499Z3 407 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 EPHA10Q5JZY3 1008 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 HIBCHQ6NVY1 386 aaPredicted RBP12.35□□□□□ -0.43
PTPRF-203ENST00000372407 RHOT2Q8IXI1 618 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 MXD3Q9BW11 206 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 BHMT2Q9H2M3 363 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 PI4KBQ9UBF8 816 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 MROH2AA6NES4 1674 aa12.35□□□□□ -0.43
PTPRF-203ENST00000372407 USP17L3A6NCW0 530 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 USP17L4A6NCW7 530 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 MT-ND3P03897 115 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 UNC13DQ70J99 1090 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 USP17L1Q7RTZ2 530 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 NCAPG2Q86XI2 1143 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 PDCD7Q8N8D1 485 aaKnown RBP12.34□□□□□ -0.43
PTPRF-203ENST00000372407 SH3GLB2Q9NR46 395 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 CPDO75976 1380 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 PNMA6FA0A0J9YX94 578 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 TLR3O15455 904 aaKnown RBP12.34□□□□□ -0.43
PTPRF-203ENST00000372407 DR1Q01658 176 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 MECOMQ03112 1051 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 MMEL1Q495T6 779 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 FAM47CQ5HY64 1035 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 NFU1Q9UMS0 254 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 GOLGA8QA0A0J9YX86 632 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 GOLGA8OA6NCC3 632 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 GOLGA8NF8WBI6 632 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 ALCAMQ13740 583 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 RCN2Q14257 317 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 R3HDM1Q15032 1099 aaKnown RBP12.34□□□□□ -0.43
PTPRF-203ENST00000372407 NLRP7Q8WX94 980 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 ANKRD36BP1Q96IX9 119 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 BPIFA3Q9BQP9 254 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 BAG5Q9UL15 447 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 MED14O60244 1454 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 ADGRB1O14514 1584 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 WDR19Q8NEZ3 1342 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 ECE1P42892 770 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 CDK8P49336 464 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 STAT2P52630 851 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 TMED2Q15363 201 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 HSP90AA5PQ58FG0 334 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 C6orf118Q5T5N4 469 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 ZMYND12Q9H0C1 365 aa12.34□□□□□ -0.43
PTPRF-203ENST00000372407 EXOC1LA0A1B0GW35 172 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 KRT1P04264 644 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 RCAN1P53805 252 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 ITKQ08881 620 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 TBC1D10BQ4KMP7 808 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-203ENST00000372407 CLEC4GQ6UXB4 293 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 EXOC8Q8IYI6 725 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 CALN1Q9BXU9 219 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 NARFQ9UHQ1 456 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 NUB1Q9Y5A7 615 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 CLRN2A0PK11 232 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 TTC36A6NLP5 189 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 PPEF1O14829 653 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-203ENST00000372407 GDF11O95390 407 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 CA4P22748 312 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 KCTD2Q14681 263 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 UBE2SQ16763 222 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 SYDE2Q5VT97 1194 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 PDIK1LQ8N165 341 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 ABHD10Q9NUJ1 306 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 PPP1R9AQ9ULJ8 1098 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 CPP00450 1065 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 PEX19P40855 299 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 HNRNPH2P55795 449 aaKnown RBP12.33□□□□□ -0.44
PTPRF-203ENST00000372407 RWDD2BP57060 319 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 BASP1P80723 227 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms