RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 TUBGCP2Q9BSJ2 902 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 PRPF4O43172 522 aaKnown RBP eCLIP7.95□□□□□ -1.142e-6■■□□□ 14
VPS13A-202ENST00000357409 TADA2AO75478 443 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 PEX19P40855 299 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 AP1B1Q10567 949 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 SIX6OS1Q8N1H7 587 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 NT5C1BQ96P26 610 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 ADCY9O60503 1353 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 GNGT1P63211 74 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 TAF1CQ15572 869 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 EMILIN3Q9NT22 766 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 SLC12A6Q9UHW9 1150 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 CLDN3O15551 220 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 SPAG7O75391 227 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 ATP5JP18859 108 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 NSFP46459 744 aaKnown RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 PCSK7Q16549 785 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 CFAP221Q4G0U5 840 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 TRIM67Q6ZTA4 783 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 RELTQ969Z4 430 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 SPATA33Q96N06 139 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 SUCLA2Q9P2R7 463 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 ATF2P15336 505 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 VWA3BQ502W6 1294 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 KIAA1468Q9P260 1216 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 PIN4Q9Y237 131 aaKnown RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 YEATS2Q9ULM3 1422 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 DDNO94850 711 aaPredicted RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 HUNKP57058 714 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 LRRC74AQ0VAA2 488 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 STXBP2Q15833 593 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 NOSTRINQ8IVI9 506 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 SLFN12Q8IYM2 578 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 ABTB1Q969K4 478 aaPredicted RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 ANP32DO95626 131 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 MFSD4BQ5TF39 518 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 SLC30A10Q6XR72 485 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 TMEM143Q96AN5 459 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 CEP95Q96GE4 821 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 A2MP01023 1474 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 EPB42P16452 691 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 ANGEL2Q5VTE6 544 aaKnown RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 CCDC62Q6P9F0 684 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 TMC4Q7Z404 712 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 PCGF5Q86SE9 256 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 TTC14Q96N46 770 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 NUP58Q9BVL2 599 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 TUT1Q9H6E5 874 aaKnown RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 CACNA2D2Q9NY47 1150 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 COL4A3BPQ9Y5P4 624 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 DFFAO00273 331 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 GRAP2O75791 330 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 PTPREP23469 700 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 RINT1Q6NUQ1 792 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 ZNF449Q6P9G9 518 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 TTC17Q96AE7 1141 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 SH3KBP1Q96B97 665 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 ADD3Q9UEY8 706 aaKnown RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 LEMD3Q9Y2U8 911 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 CCDC195A0A1B0GUA6 201 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 CD2BP2O95400 341 aaKnown RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 INPP1P49441 399 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 MIPOL1Q8TD10 442 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 MAGED4Q96JG8 741 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 SEPT5Q99719 369 aaPredicted RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 STMN4Q9H169 189 aaPredicted RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 DAAM1Q9Y4D1 1078 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 F5H6K3 240 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 PCCAP05165 728 aaPredicted RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 KLRC3Q07444 240 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 SF3B3Q15393 1217 aaKnown RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 BBS9Q3SYG4 887 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 EPHA10Q5JZY3 1008 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 LGSNQ5TDP6 509 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 OXER1Q8TDS5 423 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 LARP4BQ92615 738 aaKnown RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 ATP2A3Q93084 1043 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 NT5C3AQ9H0P0 336 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 MKL2Q9ULH7 1088 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 PCDHA4Q9UN74 947 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 LRRD1A4D1F6 860 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 I3L4J1 428 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 FGFR4P22455 802 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 TFDP1Q14186 410 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 ERICH1Q86X53 443 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 THEM5Q8N1Q8 247 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 FAF2Q96CS3 445 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 KDM2BQ8NHM5 1336 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 SKAP2O75563 359 aaPredicted RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 PTPN12Q05209 780 aaKnown RBP7.94□□□□□ -1.14
VPS13A-202ENST00000357409 TBCCQ15814 346 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 FLAD1Q8NFF5 587 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 BTN2A2Q8WVV5 523 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 MAN1B1Q9UKM7 699 aa7.94□□□□□ -1.14
VPS13A-202ENST00000357409 IBTKQ9P2D0 1353 aaPredicted RBP7.93□□□□□ -1.14
VPS13A-202ENST00000357409 A8MXQ7 604 aa7.93□□□□□ -1.14
VPS13A-202ENST00000357409 MAFGO15525 162 aa7.93□□□□□ -1.14
VPS13A-202ENST00000357409 MFAP3P55082 362 aa7.93□□□□□ -1.14
VPS13A-202ENST00000357409 POTEDQ86YR6 584 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms