RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 RASEFQ8IZ41 740 aa16.54■□□□□ 0.24
PRPF40A-201ENST00000354363 CYP2W1Q8TAV3 490 aa16.54■□□□□ 0.24
PRPF40A-201ENST00000354363 DNAJB3Q8WWF6 145 aa16.54■□□□□ 0.24
PRPF40A-201ENST00000354363 MRPL38Q96DV4 380 aaKnown RBP16.54■□□□□ 0.24
PRPF40A-201ENST00000354363 PGBD1Q96JS3 809 aa16.54■□□□□ 0.24
PRPF40A-201ENST00000354363 KCNH7Q9NS40 1196 aa16.54■□□□□ 0.24
PRPF40A-201ENST00000354363 SLC9A2Q9UBY0 812 aa16.54■□□□□ 0.24
PRPF40A-201ENST00000354363 KIAA1671Q9BY89 1806 aa16.54■□□□□ 0.24
PRPF40A-201ENST00000354363 H3BNC9 293 aa16.53■□□□□ 0.24
PRPF40A-201ENST00000354363 ZBTB43O43298 467 aa16.53■□□□□ 0.24
PRPF40A-201ENST00000354363 PPP1R18Q6NYC8 613 aa16.53■□□□□ 0.24
PRPF40A-201ENST00000354363 CENPQQ7L2Z9 268 aaPredicted RBP16.53■□□□□ 0.24
PRPF40A-201ENST00000354363 TEX2Q8IWB9 1127 aa16.53■□□□□ 0.24
PRPF40A-201ENST00000354363 CDY2AQ9Y6F7 541 aa16.53■□□□□ 0.24
PRPF40A-201ENST00000354363 V9GY48 417 aaPredicted RBP16.53■□□□□ 0.24
PRPF40A-201ENST00000354363 NFASCO94856 1347 aa16.53■□□□□ 0.24
PRPF40A-201ENST00000354363 STXBP3O00186 592 aa16.52■□□□□ 0.24
PRPF40A-201ENST00000354363 FOSP01100 380 aaPredicted RBP16.52■□□□□ 0.24
PRPF40A-201ENST00000354363 ARP10275 920 aa16.52■□□□□ 0.24
PRPF40A-201ENST00000354363 INSRRP14616 1297 aa16.52■□□□□ 0.24
PRPF40A-201ENST00000354363 ADCY7P51828 1080 aa16.52■□□□□ 0.24
PRPF40A-201ENST00000354363 IGBP1P78318 339 aa16.52■□□□□ 0.24
PRPF40A-201ENST00000354363 GPM6BQ13491 265 aa16.52■□□□□ 0.24
PRPF40A-201ENST00000354363 PTPROQ16827 1216 aa16.52■□□□□ 0.24
PRPF40A-201ENST00000354363 FBXO47Q5MNV8 452 aa16.52■□□□□ 0.24
PRPF40A-201ENST00000354363 ZBTB10Q96DT7 871 aa16.52■□□□□ 0.24
PRPF40A-201ENST00000354363 ANO3Q9BYT9 981 aa16.52■□□□□ 0.24
PRPF40A-201ENST00000354363 FAM217BQ9NTX9 383 aaPredicted RBP16.52■□□□□ 0.24
PRPF40A-201ENST00000354363 RRN3P2A6NIE6 340 aa16.52■□□□□ 0.23
PRPF40A-201ENST00000354363 GOLGA8AA7E2F4 631 aa16.52■□□□□ 0.23
PRPF40A-201ENST00000354363 GOLGA8BA8MQT2 603 aa16.52■□□□□ 0.23
PRPF40A-201ENST00000354363 hCG_1984214I3L0E3 225 aa16.52■□□□□ 0.23
PRPF40A-201ENST00000354363 MRPS6P82932 125 aaKnown RBP16.52■□□□□ 0.23
PRPF40A-201ENST00000354363 CEP55Q53EZ4 464 aa16.52■□□□□ 0.23
PRPF40A-201ENST00000354363 ZNF713Q8N859 430 aaPredicted RBP16.52■□□□□ 0.23
PRPF40A-201ENST00000354363 IL17RAQ96F46 866 aa16.52■□□□□ 0.23
PRPF40A-201ENST00000354363 SDF4Q9BRK5 362 aa16.52■□□□□ 0.23
PRPF40A-201ENST00000354363 AZI2Q9H6S1 392 aa16.52■□□□□ 0.23
PRPF40A-201ENST00000354363 RAPGEFL1Q9UHV5 662 aa16.52■□□□□ 0.23
PRPF40A-201ENST00000354363 KLF18A0A0U1RQI7 1052 aa16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 SMCO2A6NFE2 343 aa16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 ENPP3O14638 875 aa16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 CDC27P30260 824 aa16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 ACTR2P61160 394 aa16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 ITGB3BPQ13352 177 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 PLCB4Q15147 1175 aa16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 LEXMQ3ZCV2 418 aa16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 TIGD5Q53EQ6 642 aa16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 TSHZ1Q6ZSZ6 1077 aa16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 FIBCD1Q8N539 461 aa16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 FAM49AQ9H0Q0 323 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 RC3H2Q9HBD1 1191 aaKnown RBP16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 AGO4Q9HCK5 861 aaKnown RBP16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 TMEM260Q9NX78 707 aa16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 BARHL2Q9NY43 387 aa16.51■□□□□ 0.23
PRPF40A-201ENST00000354363 MEIS1O00470 390 aa16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 CDC45O75419 566 aa16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 RPLP2P05387 115 aaKnown RBP16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 LINC00271P0C7V0 271 aa16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 KCNA5P22460 613 aa16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 SREBF1P36956 1147 aa16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 CLK2P49760 499 aaKnown RBP16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 AP3B2Q13367 1082 aa16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 KRT32Q14532 448 aa16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 PLPPR4Q7Z2D5 763 aa16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 TRAPPC12Q8WVT3 735 aa16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 C1QTNF1Q9BXJ1 281 aa16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 EPHX3Q9H6B9 360 aa16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 AGO3Q9H9G7 860 aaKnown RBP16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 TRPC6Q9Y210 931 aa16.5■□□□□ 0.23
PRPF40A-201ENST00000354363 ATG7O95352 703 aa16.49■□□□□ 0.23
PRPF40A-201ENST00000354363 CTNNB1P35222 781 aa16.49■□□□□ 0.23
PRPF40A-201ENST00000354363 STAT5BP51692 787 aa16.49■□□□□ 0.23
PRPF40A-201ENST00000354363 RCAN1P53805 252 aa16.49■□□□□ 0.23
PRPF40A-201ENST00000354363 BANK1Q8NDB2 785 aa16.49■□□□□ 0.23
PRPF40A-201ENST00000354363 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.49■□□□□ 0.23
PRPF40A-201ENST00000354363 LINC01599Q8WXQ3 324 aa16.49■□□□□ 0.23
PRPF40A-201ENST00000354363 TNPO1Q92973 898 aaKnown RBP16.49■□□□□ 0.23
PRPF40A-201ENST00000354363 GLT8D2Q9H1C3 349 aa16.49■□□□□ 0.23
PRPF40A-201ENST00000354363 PCDHA2Q9Y5H9 948 aa16.49■□□□□ 0.23
PRPF40A-201ENST00000354363 ADGRA3Q8IWK6 1321 aa16.49■□□□□ 0.23
PRPF40A-201ENST00000354363 C5orf67F2Z3F1 127 aa16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 CD52P31358 61 aa16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 TCEAL5Q5H9L2 206 aa16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 IER5Q5VY09 327 aa16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 ZNF689Q96CS4 500 aaPredicted RBP16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 CD320Q9NPF0 282 aa16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 TRPV2Q9Y5S1 764 aa16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 SQORQ9Y6N5 450 aa16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 FNDC1Q4ZHG4 1894 aaPredicted RBP16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 RB1P06400 928 aa16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 HMGB1P09429 215 aaKnown RBP16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 BMPR1AP36894 532 aa16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 TMEM62Q0P6H9 643 aa16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 NIPA1Q7RTP0 329 aa16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 RTN4RL1Q86UN2 441 aaPredicted RBP16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 NEK9Q8TD19 979 aa16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 KHSRPQ92945 711 aaKnown RBP eCLIP16.48■□□□□ 0.232e-7■■■□□ 15.9
PRPF40A-201ENST00000354363 NSUN3Q9H649 340 aaKnown RBP16.48■□□□□ 0.23
PRPF40A-201ENST00000354363 NAP1L2Q9ULW6 460 aaPredicted RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms