RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 DPH5Q9H2P9 285 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 TIMMDC1Q9NPL8 285 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 OLFML3Q9NRN5 406 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 YEATS2Q9ULM3 1422 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 EXOC3O60645 756 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 TAF1BQ53T94 588 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-203ENST00000353578 NHEJ1Q9H9Q4 299 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-203ENST00000353578 RHBDL2Q9NX52 303 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 NSMCE4AQ9NXX6 385 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 LIMA1Q9UHB6 759 aaKnown RBP13.51□□□□□ -0.25
COL6A3-203ENST00000353578 ADCY9O60503 1353 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 GOLGA8RI6L899 631 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 HERC4Q5GLZ8 1057 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-203ENST00000353578 PATL1Q86TB9 770 aaKnown RBP13.51□□□□□ -0.25
COL6A3-203ENST00000353578 KLHL31Q9H511 634 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 GPR141Q7Z602 305 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 KLHL2O95198 593 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 GSNP06396 782 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 PECAM1P16284 738 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-203ENST00000353578 PPP2R5CQ13362 524 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 EXOC3L4Q17RC7 722 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 ATP8B4Q8TF62 1192 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 MAGEB6P1A0A0J9YX57 407 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 F6X3S4 739 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 CEP78Q5JTW2 689 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 TTC13Q8NBP0 860 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 FAM167BQ9BTA0 163 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 TRMT44Q8IYL2 757 aaKnown RBP13.5□□□□□ -0.25
COL6A3-203ENST00000353578 SIX6OS1Q8N1H7 587 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 PNMA8CA0A1B0GUJ8 204 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 PIK3R2O00459 728 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 TUBA1BP68363 451 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 RGS9BPQ6ZS82 235 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 TUBA1AQ71U36 451 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 BEGAINQ9BUH8 593 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 LZTS3O60299 673 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-203ENST00000353578 DNAJC6O75061 913 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 SNRPA1P09661 255 aaKnown RBP13.5□□□□□ -0.25
COL6A3-203ENST00000353578 RECQLP46063 649 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-203ENST00000353578 TNNI2P48788 182 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 LDHAL6AQ6ZMR3 332 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 SKAP1Q86WV1 359 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 CCDC103Q8IW40 242 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 DLGAP2Q9P1A6 1054 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 MEIS1O00470 390 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 PMS1P54277 932 aaKnown RBP13.5□□□□□ -0.25
COL6A3-203ENST00000353578 TMPRSS15P98073 1019 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 MRRFQ96E11 262 aaKnown RBP13.5□□□□□ -0.25
COL6A3-203ENST00000353578 MXD3Q9BW11 206 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 PLEKHA4Q9H4M7 779 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 LRWD1Q9UFC0 647 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 HMOX2P30519 316 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 ADCK5Q3MIX3 580 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 OTUB1Q96FW1 271 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-203ENST00000353578 RAPGEF6Q8TEU7 1601 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 WBP4O75554 376 aaKnown RBP13.5□□□□□ -0.25
COL6A3-203ENST00000353578 CARMIL3Q8ND23 1372 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 COPEO14579 308 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 FKBP3Q00688 224 aaKnown RBP13.5□□□□□ -0.25
COL6A3-203ENST00000353578 WLSQ5T9L3 541 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 CYFIP2Q96F07 1278 aa13.5□□□□□ -0.25
COL6A3-203ENST00000353578 A0A0G2JND7 137 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 ATF7P17544 494 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-203ENST00000353578 COPS2P61201 443 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 SLC40A1Q9NP59 571 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 ABCA10Q8WWZ4 1543 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 MED23Q9ULK4 1368 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 CDH16O75309 829 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 GNAT1P11488 350 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 STAT4Q14765 748 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 CALML6Q8TD86 181 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 CCT7Q99832 543 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 LRRC2Q9BYS8 371 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 GAP43P17677 238 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 EPS8Q12929 822 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 ARMCX4Q5H9R4 360 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 ZNF473Q8WTR7 871 aaKnown RBP13.49□□□□□ -0.25
COL6A3-203ENST00000353578 VPS39Q96JC1 886 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 ZNF212Q9UDV6 495 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 ARFIP2P53365 341 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 C2orf54Q08AI8 447 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 FBXW10Q5XX13 1052 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 RIN3Q8TB24 985 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 UBA2Q9UBT2 640 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-203ENST00000353578 ABCE1P61221 599 aaKnown RBP13.49□□□□□ -0.25
COL6A3-203ENST00000353578 ZNF658Q5TYW1 1059 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-203ENST00000353578 ANKRD13DQ6ZTN6 518 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 IL17RAQ96F46 866 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 FAM161BQ96MY7 647 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.49□□□□□ -0.25
COL6A3-203ENST00000353578 ROPN1BQ9BZX4 212 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-203ENST00000353578 ROPN1Q9HAT0 212 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-203ENST00000353578 PLEKHG2Q9H7P9 1386 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 ARHGEF35A5YM69 484 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 TMEM132EQ6IEE7 984 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.49□□□□□ -0.25
COL6A3-203ENST00000353578 UVRAGQ9P2Y5 699 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 TRIM66O15016 1216 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 FAM200BP0CF97 657 aa13.49□□□□□ -0.25
COL6A3-203ENST00000353578 PLS3P13797 630 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms