RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 MCTP2Q6DN12 878 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 MIGA2Q7L4E1 593 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 TRIM58Q8NG06 486 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 CAGE1Q8TC20 777 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 WDR18Q9BV38 432 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 ARHGEF10LQ9HCE6 1279 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 L1RE1Q9UN81 338 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 MAGEA1P43355 309 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 RASSF7Q02833 373 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 CTTNQ14247 550 aaKnown RBP21.34■■□□□ 1.01
COL9A3-201ENST00000343916 PSMB7Q99436 277 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 VEZTQ9HBM0 779 aa21.34■■□□□ 1.01
COL9A3-201ENST00000343916 ZNF70Q9UC06 446 aaPredicted RBP21.34■■□□□ 1.01
COL9A3-201ENST00000343916 ZBTB39O15060 712 aa21.33■■□□□ 1.01
COL9A3-201ENST00000343916 CETN3O15182 167 aa21.33■■□□□ 1.01
COL9A3-201ENST00000343916 SLC26A4O43511 780 aa21.33■■□□□ 1.01
COL9A3-201ENST00000343916 POLD1P28340 1107 aa21.33■■□□□ 1.01
COL9A3-201ENST00000343916 KCNA1Q09470 495 aa21.33■■□□□ 1.01
COL9A3-201ENST00000343916 KCNH2Q12809 1159 aa21.33■■□□□ 1.01
COL9A3-201ENST00000343916 H3BQF6 201 aa21.33■■□□□ 1
COL9A3-201ENST00000343916 PIK3CDO00329 1044 aa21.33■■□□□ 1
COL9A3-201ENST00000343916 TACC1O75410 805 aa21.33■■□□□ 1
COL9A3-201ENST00000343916 EPS15P42566 896 aa21.33■■□□□ 1
COL9A3-201ENST00000343916 KNOP1Q1ED39 458 aaKnown RBP21.33■■□□□ 1
COL9A3-201ENST00000343916 EDRF1Q3B7T1 1238 aa21.33■■□□□ 1
COL9A3-201ENST00000343916 SFMBT2Q5VUG0 894 aa21.33■■□□□ 1
COL9A3-201ENST00000343916 RSBN1LQ6PCB5 846 aaPredicted RBP21.33■■□□□ 1
COL9A3-201ENST00000343916 SUPT20HQ8NEM7 779 aa21.33■■□□□ 1
COL9A3-201ENST00000343916 ZBTB21Q9ULJ3 1066 aa21.33■■□□□ 1
COL9A3-201ENST00000343916 TMX2Q9Y320 296 aa21.33■■□□□ 1
COL9A3-201ENST00000343916 RABGAP1Q9Y3P9 1069 aa21.33■■□□□ 1
COL9A3-201ENST00000343916 ZMYND10O75800 440 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 USP14P54578 494 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 DLGAP5Q15398 846 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 ZC3H3Q8IXZ2 948 aaKnown RBP21.32■■□□□ 1
COL9A3-201ENST00000343916 COG1Q8WTW3 980 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 TMEM39BQ9GZU3 492 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 ZNF277Q9NRM2 450 aaPredicted RBP21.32■■□□□ 1
COL9A3-201ENST00000343916 JRKLQ9Y4A0 524 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 BUB1O43683 1085 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 CYP3A4P08684 503 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 ACTN1P12814 892 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 CXCR5P32302 372 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 GYS2P54840 703 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 RAPGEF1Q13905 1077 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 HDXQ7Z353 690 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 GLIS2Q9BZE0 524 aaPredicted RBP21.32■■□□□ 1
COL9A3-201ENST00000343916 EDEM3Q9BZQ6 932 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 PDE11AQ9HCR9 933 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 SNX12Q9UMY4 172 aa21.32■■□□□ 1
COL9A3-201ENST00000343916 SCAF8Q9UPN6 1271 aaKnown RBP21.32■■□□□ 1
COL9A3-201ENST00000343916 C2orf54Q08AI8 447 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 MAPK8IP2Q13387 824 aaPredicted RBP21.31■■□□□ 1
COL9A3-201ENST00000343916 SLC9C1Q4G0N8 1177 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 PPP4R3CPQ6ZMV5 832 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 EPM2AIP1Q7L775 607 aaPredicted RBP21.31■■□□□ 1
COL9A3-201ENST00000343916 DEFB132Q7Z7B7 95 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 TPH2Q8IWU9 490 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 HINFPQ9BQA5 517 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 IKZF4Q9H2S9 585 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 GOPCQ9HD26 462 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.31■■□□□ 1
COL9A3-201ENST00000343916 HDAC9Q9UKV0 1011 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 CNTNAP1P78357 1384 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 SSU72P8A0A1W2PR75 194 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 GCNT3O95395 438 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 NFRKBQ6P4R8 1299 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 FAM133AQ8N9E0 248 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 FBXO28Q9NVF7 368 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 TRAF3IP3Q9Y228 551 aa21.31■■□□□ 1
COL9A3-201ENST00000343916 NCK2O43639 380 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 FAM193AP78312 1265 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 CKAP4Q07065 602 aaKnown RBP21.3■■□□□ 1
COL9A3-201ENST00000343916 LRCH2Q5VUJ6 765 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 WDR93Q6P2C0 686 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 OTOP1Q7RTM1 612 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 CREG2Q8IUH2 290 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 LARGE2Q8N3Y3 721 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 FAM151AQ8WW52 585 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 FAM184BQ9ULE4 1060 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 COL2A1P02458 1487 aaPredicted RBP21.3■■□□□ 1
COL9A3-201ENST00000343916 CLIC2O15247 247 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 AKAP3O75969 853 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 OGFOD1Q8N543 542 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 POLR3CQ9BUI4 534 aaPredicted RBP21.3■■□□□ 1
COL9A3-201ENST00000343916 STK32BQ9NY57 414 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 SMARCAL1Q9NZC9 954 aa21.3■■□□□ 1
COL9A3-201ENST00000343916 GCOM1H8Y6P7 765 aaPredicted RBP21.29■■□□□ 1
COL9A3-201ENST00000343916 TBCAO75347 108 aaKnown RBP21.29■■□□□ 1
COL9A3-201ENST00000343916 EYA4O95677 639 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 SERPING1P05155 500 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 POLR2MP0CAP2 368 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 SLC9A1P19634 815 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 CASP4P49662 377 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 NAP1L1P55209 391 aaKnown RBP21.29■■□□□ 1
COL9A3-201ENST00000343916 CASP8Q14790 479 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 DCAF17Q5H9S7 520 aaPredicted RBP21.29■■□□□ 1
COL9A3-201ENST00000343916 RINT1Q6NUQ1 792 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 DYDC2Q96IM9 177 aa21.29■■□□□ 1
COL9A3-201ENST00000343916 HSD17B14Q9BPX1 270 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms