RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 OLFM3Q96PB7 478 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 MRPL47Q9HD33 250 aaKnown RBP5.17□□□□□ -1.58
CSMD3-203ENST00000343508 SENP1Q9P0U3 644 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 STK10O94804 968 aaKnown RBP5.17□□□□□ -1.58
CSMD3-203ENST00000343508 BAG2O95816 211 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 FOXO4P98177 505 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 PTPROQ16827 1216 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 KIFC2Q96AC6 838 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 DNAJC7Q99615 494 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 ZNF148Q9UQR1 794 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 PRAMEF22A3QJZ6 481 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 PRPF6O94906 941 aaKnown RBP5.17□□□□□ -1.58
CSMD3-203ENST00000343508 BPIFB4P59827 614 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 DDB1Q16531 1140 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 NBPF20Q3BBV1 942 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 SERPINI1Q99574 410 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 ARHGEF10LQ9HCE6 1279 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 PFASO15067 1338 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 PDS5AQ29RF7 1337 aaKnown RBP5.17□□□□□ -1.58
CSMD3-203ENST00000343508 FAM187AA6NFU0 413 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 SGK1O00141 431 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 MSH2P43246 934 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 MFAP3P55082 362 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 ATG16L1Q676U5 607 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 TRPM8Q7Z2W7 1104 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 TBC1D22AQ8WUA7 517 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 ZIM3Q96PE6 472 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 MAP3K14Q99558 947 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 TRIM55Q9BYV6 548 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 MRPS35P82673 323 aaKnown RBP5.17□□□□□ -1.58
CSMD3-203ENST00000343508 ARHGAP4P98171 946 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 HDLBPQ00341 1268 aaKnown RBP5.17□□□□□ -1.58
CSMD3-203ENST00000343508 GPIHBP1Q8IV16 184 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 TGFBRAP1Q8WUH2 860 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 SYN2Q92777 582 aaPredicted RBP5.17□□□□□ -1.58
CSMD3-203ENST00000343508 DTNBP1Q96EV8 351 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 ANKRD27Q96NW4 1050 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 FAM129AQ9BZQ8 928 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 ISCUQ9H1K1 167 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 SLC24A3Q9HC58 644 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 GMNNO75496 209 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 CYP2J2P51589 502 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 ITIH4Q14624 930 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 CCDC137Q6PK04 289 aaKnown RBP5.17□□□□□ -1.58
CSMD3-203ENST00000343508 KRT26Q7Z3Y9 468 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 GDAP1Q8TB36 358 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 PIP4K2CQ8TBX8 421 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 CNKSR2Q8WXI2 1034 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 PHF20Q9BVI0 1012 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 AGXT2Q9BYV1 514 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 YIPF3Q9GZM5 350 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 MIS12Q9H081 205 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 GGA2Q9UJY4 613 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 ZBTB21Q9ULJ3 1066 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 TMED2Q15363 201 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 DBN1Q16643 649 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 NLRP10Q86W26 655 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 PPM1KQ8N3J5 372 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 SLC40A1Q9NP59 571 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 MYH6P13533 1939 aa5.17□□□□□ -1.58
CSMD3-203ENST00000343508 CEP170BQ9Y4F5 1589 aaPredicted RBP5.17□□□□□ -1.58
CSMD3-203ENST00000343508 IQANK1A0A1B0GTG1 560 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 MAP2K7O14733 419 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 PPP1R12AO14974 1030 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-203ENST00000343508 CHMP2AO43633 222 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 CHGBP05060 677 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 MAPK4P31152 587 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 SLCO1A2P46721 670 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 TPD52P55327 224 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-203ENST00000343508 YTHDF3Q7Z739 585 aaKnown RBP5.16□□□□□ -1.58
CSMD3-203ENST00000343508 RIBC1Q8N443 379 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-203ENST00000343508 THOC1Q96FV9 657 aaKnown RBP5.16□□□□□ -1.58
CSMD3-203ENST00000343508 BARHL2Q9NY43 387 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 ATF7P17544 494 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-203ENST00000343508 ANXA13P27216 316 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 TPH2Q8IWU9 490 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 CABLES1Q8TDN4 633 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 PARVGQ9HBI0 331 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 USTQ9Y2C2 406 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 RTCBQ9Y3I0 505 aaKnown RBP5.16□□□□□ -1.58
CSMD3-203ENST00000343508 EIF6P56537 245 aaKnown RBP5.16□□□□□ -1.58
CSMD3-203ENST00000343508 NCAPHQ15003 741 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 CENPUQ71F23 418 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 DGKHQ86XP1 1220 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 USP38Q8NB14 1042 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 WNT8AQ9H1J5 351 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 ETNK1Q9HBU6 452 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 LCMT1Q9UIC8 334 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 USP15Q9Y4E8 981 aaPredicted RBP5.16□□□□□ -1.58
CSMD3-203ENST00000343508 ABCB11O95342 1321 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 TTLL1O95922 423 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 AARSP49588 968 aaKnown RBP eCLIP5.16□□□□□ -1.58
CSMD3-203ENST00000343508 KCNH2Q12809 1159 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 ALCAMQ13740 583 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 ANKRD20A4Q4UJ75 823 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 ANKRD20A8PQ5CZ79 823 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 ANKRD20A2Q5SQ80 823 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 ANKRD20A1Q5TYW2 823 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 SLC30A9Q6PML9 568 aa5.16□□□□□ -1.58
CSMD3-203ENST00000343508 ZC3H18Q86VM9 953 aaKnown RBP5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms