RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DYDC2Q96IM9 177 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 ZBTB21Q9ULJ3 1066 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 A0A1W2PQJ5 194 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 CETN3O15182 167 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 PHACTR2O75167 634 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 TBCAO75347 108 aaKnown RBP11.4□□□□□ -0.58
LIMA1-201ENST00000341247 RPA1P27694 616 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 CASP4P49662 377 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 KCNH2Q12809 1159 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 TBC1D10BQ4KMP7 808 aaPredicted RBP11.4□□□□□ -0.58
LIMA1-201ENST00000341247 ZC2HC1CQ53FD0 456 aaPredicted RBP11.4□□□□□ -0.58
LIMA1-201ENST00000341247 HYIQ5T013 277 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 KCTD10Q9H3F6 313 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 RABGAP1Q9Y3P9 1069 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 CCDC151A5D8V7 595 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 SLC9A1P19634 815 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 NMT1P30419 496 aaKnown RBP11.4□□□□□ -0.58
LIMA1-201ENST00000341247 RNASE9P60153 205 aaKnown RBP11.4□□□□□ -0.58
LIMA1-201ENST00000341247 KCTD19Q17RG1 926 aaPredicted RBP11.4□□□□□ -0.58
LIMA1-201ENST00000341247 NBPF9Q3BBW0 867 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 LRCH2Q5VUJ6 765 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 NFRKBQ6P4R8 1299 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 COG1Q8WTW3 980 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 CRYGNQ8WXF5 182 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 BCS1LQ9Y276 419 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 NOL4O94818 638 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 SFMBT2Q5VUG0 894 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 TTLL6Q8N841 843 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 PDE11AQ9HCR9 933 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 PRDM4Q9UKN5 801 aa11.4□□□□□ -0.58
LIMA1-201ENST00000341247 ABCB11O95342 1321 aa11.4□□□□□ -0.59
LIMA1-201ENST00000341247 MYH10P35580 1976 aa11.4□□□□□ -0.59
LIMA1-201ENST00000341247 TLR2O60603 784 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 FOSP01100 380 aaPredicted RBP11.39□□□□□ -0.59
LIMA1-201ENST00000341247 DPEP1P16444 411 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 TNNT3P45378 269 aaPredicted RBP11.39□□□□□ -0.59
LIMA1-201ENST00000341247 FIGNQ5HY92 759 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 MYCT1Q8N699 235 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 AGBL1Q96MI9 1066 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 ADAMTS1Q9UHI8 967 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 HDAC9Q9UKV0 1011 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 VAV3Q9UKW4 847 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 CNTNAP1P78357 1384 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 GCOM1H8Y6P7 765 aaPredicted RBP11.39□□□□□ -0.59
LIMA1-201ENST00000341247 N4BP1O75113 896 aaKnown RBP11.39□□□□□ -0.59
LIMA1-201ENST00000341247 TACC1O75410 805 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 POLR2MP0CAP2 368 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 ARP10275 920 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 HOXD13P35453 343 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 FKBP1AP62942 108 aaKnown RBP11.39□□□□□ -0.59
LIMA1-201ENST00000341247 GABPB1Q06547 395 aaPredicted RBP11.39□□□□□ -0.59
LIMA1-201ENST00000341247 Q4G0T1 1027 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 BEND6Q5SZJ8 279 aaPredicted RBP11.39□□□□□ -0.59
LIMA1-201ENST00000341247 SYT2Q8N9I0 419 aaPredicted RBP11.39□□□□□ -0.59
LIMA1-201ENST00000341247 EHBP1Q8NDI1 1231 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 GOPCQ9HD26 462 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 H3BQF6 201 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 GAS7O60861 476 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 BRD3Q15059 726 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 GJB7Q6PEY0 223 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 TRIM59Q8IWR1 403 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 RDH13Q8NBN7 331 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 BANK1Q8NDB2 785 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 MBOAT7Q96N66 472 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 PACSIN1Q9BY11 444 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 SH2D4AQ9H788 454 aa11.39□□□□□ -0.59
LIMA1-201ENST00000341247 PACSIN2Q9UNF0 486 aaPredicted RBP11.39□□□□□ -0.59
LIMA1-201ENST00000341247 FAM13AO94988 1023 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 COG2Q14746 738 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 KNOP1Q1ED39 458 aaKnown RBP11.38□□□□□ -0.59
LIMA1-201ENST00000341247 ARMCX3Q9UH62 379 aaPredicted RBP11.38□□□□□ -0.59
LIMA1-201ENST00000341247 AKAP3O75969 853 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 SLC9C1Q4G0N8 1177 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 HGSNATQ68CP4 663 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 SUPT20HQ8NEM7 779 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 FAM20AQ96MK3 541 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 SPAG5Q96R06 1193 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 HERC5Q9UII4 1024 aaKnown RBP11.38□□□□□ -0.59
LIMA1-201ENST00000341247 TMX2Q9Y320 296 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 ERLIN1O75477 346 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 FTCDO95954 541 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 HMGB2P26583 209 aaKnown RBP11.38□□□□□ -0.59
LIMA1-201ENST00000341247 KLHL30Q0D2K2 578 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 TUBB2AQ13885 445 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 PAPD7Q5XG87 772 aaKnown RBP11.38□□□□□ -0.59
LIMA1-201ENST00000341247 MSANTD4Q8NCY6 345 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 FAM151AQ8WW52 585 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 CCDC102AQ96A19 550 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 GMLQ99445 158 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 TUBB2BQ9BVA1 445 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 ZNF341Q9BYN7 854 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 GOLPH3Q9H4A6 298 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.38□□□□□ -0.596e-7■■■■■ 85.5
LIMA1-201ENST00000341247 WRAP73Q9P2S5 460 aaPredicted RBP11.38□□□□□ -0.59
LIMA1-201ENST00000341247 ASTN2O75129 1339 aaPredicted RBP11.38□□□□□ -0.59
LIMA1-201ENST00000341247 PSME4Q14997 1843 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 ATRNL1Q5VV63 1379 aa11.38□□□□□ -0.59
LIMA1-201ENST00000341247 IGLV3-22A0A075B6J6 115 aa11.37□□□□□ -0.59
LIMA1-201ENST00000341247 KIF20AO95235 890 aa11.37□□□□□ -0.59
LIMA1-201ENST00000341247 SLC7A5Q01650 507 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms