RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 SPATA1Q5VX52 437 aa6.16□□□□□ -1.42
CSDE1-202ENST00000339438 CCDC121Q6ZUS5 278 aa6.16□□□□□ -1.42
CSDE1-202ENST00000339438 SPICE1Q8N0Z3 855 aa6.16□□□□□ -1.42
CSDE1-202ENST00000339438 SMCR8Q8TEV9 937 aaPredicted RBP6.16□□□□□ -1.42
CSDE1-202ENST00000339438 LPIN2Q92539 896 aa6.16□□□□□ -1.42
CSDE1-202ENST00000339438 P3H4Q92791 437 aa6.16□□□□□ -1.42
CSDE1-202ENST00000339438 AIDAQ96BJ3 306 aa6.16□□□□□ -1.42
CSDE1-202ENST00000339438 CNNM1Q9NRU3 951 aa6.16□□□□□ -1.42
CSDE1-202ENST00000339438 ZFATQ9P243 1243 aa6.16□□□□□ -1.42
CSDE1-202ENST00000339438 STIM2Q9P246 746 aa6.16□□□□□ -1.42
CSDE1-202ENST00000339438 SNX12Q9UMY4 172 aa6.16□□□□□ -1.42
CSDE1-202ENST00000339438 MYO3BQ8WXR4 1341 aa6.16□□□□□ -1.42
CSDE1-202ENST00000339438 ZSCAN5CA6NGD5 496 aaPredicted RBP6.15□□□□□ -1.42
CSDE1-202ENST00000339438 NPTXRO95502 500 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 APLP1P51693 650 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 CCDC181Q5TID7 509 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 CCDC102BQ68D86 513 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 DPY19L2Q6NUT2 758 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 RPUSD2Q8IZ73 545 aaKnown RBP6.15□□□□□ -1.42
CSDE1-202ENST00000339438 SYT15Q9BQS2 421 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 UBE2OQ9C0C9 1292 aaKnown RBP6.15□□□□□ -1.42
CSDE1-202ENST00000339438 RRAGCQ9HB90 399 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 SAGE1Q9NXZ1 904 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 FBXO2Q9UK22 296 aaPredicted RBP6.15□□□□□ -1.42
CSDE1-202ENST00000339438 PPP2R3BQ9Y5P8 575 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 GOLGA6L7A0A1B0GV03 622 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 HMGB1P09429 215 aaKnown RBP6.15□□□□□ -1.42
CSDE1-202ENST00000339438 MAGEA10P43363 369 aaPredicted RBP6.15□□□□□ -1.42
CSDE1-202ENST00000339438 CARSP49589 748 aaKnown RBP6.15□□□□□ -1.42
CSDE1-202ENST00000339438 CKAP4Q07065 602 aaKnown RBP6.15□□□□□ -1.42
CSDE1-202ENST00000339438 PUM3Q15397 648 aaKnown RBP6.15□□□□□ -1.42
CSDE1-202ENST00000339438 SLC35G1Q2M3R5 365 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 GALNTL6Q49A17 601 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 PIGWQ7Z7B1 504 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 RAPGEF5Q92565 580 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 AZIN2Q96A70 460 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 AIFM3Q96NN9 605 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 FSD1Q9BTV5 496 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 SMARCAL1Q9NZC9 954 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 EHD2Q9NZN4 543 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 HOOK1Q9UJC3 728 aaKnown RBP6.15□□□□□ -1.42
CSDE1-202ENST00000339438 ANAPC4Q9UJX5 808 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.15□□□□□ -1.42
CSDE1-202ENST00000339438 LRRC42Q9Y546 428 aa6.15□□□□□ -1.42
CSDE1-202ENST00000339438 DCDC2CA8MYV0 355 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 HMGB1P1B2RPK0 211 aaPredicted RBP6.15□□□□□ -1.43
CSDE1-202ENST00000339438 BUB1BO60566 1050 aaPredicted RBP6.15□□□□□ -1.43
CSDE1-202ENST00000339438 DIAPH2O60879 1101 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 GSTA1P08263 222 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 ADAM9Q13443 819 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 MYBPC3Q14896 1274 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 SGSM1Q2NKQ1 1148 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 CMPK2Q5EBM0 449 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 ANKRD20A2Q5SQ80 823 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 ANKRD20A1Q5TYW2 823 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 HHATQ5VTY9 493 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 ANKRD20A3Q5VUR7 823 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 CHST3Q7LGC8 479 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 ERICH1Q86X53 443 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 IRF2BP1Q8IU81 584 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 C8orf76Q96K31 380 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 FGD4Q96M96 766 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 TMOD1P28289 359 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 EPHX2P34913 555 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 CTCFP49711 727 aaPredicted RBP6.15□□□□□ -1.43
CSDE1-202ENST00000339438 ANTXR2P58335 489 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 TMEM62Q0P6H9 643 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 PLS1Q14651 629 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 KRT31Q15323 416 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 OR52E8Q6IFG1 317 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 LDHAL6AQ6ZMR3 332 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 ARHGAP22Q7Z5H3 698 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 EHBP1Q8NDI1 1231 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 ZNF507Q8TCN5 953 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 CCHCR1Q8TD31 782 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 VWCEQ96DN2 955 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 CCDC43Q96MW1 224 aaKnown RBP6.15□□□□□ -1.43
CSDE1-202ENST00000339438 ANKRD2Q9GZV1 360 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 R3HDMLQ9H3Y0 253 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 EPB41L4AQ9HCS5 686 aaPredicted RBP6.15□□□□□ -1.43
CSDE1-202ENST00000339438 ZNF219Q9P2Y4 722 aaPredicted RBP6.15□□□□□ -1.43
CSDE1-202ENST00000339438 PHF24Q9UPV7 400 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 DAGLAQ9Y4D2 1042 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 CAPN6Q9Y6Q1 641 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 STK36Q9NRP7 1315 aa6.15□□□□□ -1.43
CSDE1-202ENST00000339438 CCT8L1PA6NM43 557 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 A8MUI8 341 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 BACH1O14867 736 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 EDIL3O43854 480 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 ORC4O43929 436 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 CDKL5O76039 1030 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 MYL1P05976 194 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 RARAP10276 462 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 HSPA9P38646 679 aaKnown RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 BCAMP50895 628 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 KCNJ2P63252 427 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 MAP3K12Q12852 859 aa6.14□□□□□ -1.43
CSDE1-202ENST00000339438 IFIT5Q13325 482 aaKnown RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 HIBCHQ6NVY1 386 aaPredicted RBP6.14□□□□□ -1.43
CSDE1-202ENST00000339438 ASRGL1Q7L266 308 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms