RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SP2Q02086 613 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 CTTNQ14247 550 aaKnown RBP16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 DEFB115Q30KQ5 88 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 KMT5BQ4FZB7 885 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 METTL7BQ6UX53 244 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 ABHD15Q6UXT9 468 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 DHX40Q8IX18 779 aaKnown RBP16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 SOCS4Q8WXH5 440 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 DDX12PQ92771 950 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 MAML3Q96JK9 1138 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 CAPNS2Q96L46 248 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 ZIC5Q96T25 663 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 DDX41Q9UJV9 622 aaKnown RBP16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 IGSF9BQ9UPX0 1349 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 IGKV6D-21A0A0A0MT36 114 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 PPP1R3GB7ZBB8 358 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 DDX39AO00148 427 aaKnown RBP16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 FARP2O94887 1054 aaPredicted RBP16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 IGHA2P01877 340 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 PSAPP07602 524 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 ACTR2P61160 394 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 MAP2K5Q13163 448 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 PSMD2Q13200 908 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 NCAPHQ15003 741 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 ARSHQ5FYA8 562 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 FOXR2Q6PJQ5 311 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 LUZP1Q86V48 1076 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 GPBP1Q86WP2 473 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 TPH2Q8IWU9 490 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 SCFD2Q8WU76 684 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 ATP6V0A1Q93050 837 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 ANKEF1Q9NU02 776 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 THSD7BQ9C0I4 1608 aa16.63■□□□□ 0.25
CCDC88C-202ENST00000334448 SMTNL1A8MU46 457 aa16.62■□□□□ 0.25
CCDC88C-202ENST00000334448 SUPT20HL2P0C7V6 817 aa16.62■□□□□ 0.25
CCDC88C-202ENST00000334448 GUCY2CP25092 1073 aa16.62■□□□□ 0.25
CCDC88C-202ENST00000334448 MYL5Q02045 173 aa16.62■□□□□ 0.25
CCDC88C-202ENST00000334448 SEPT14Q6ZU15 432 aa16.62■□□□□ 0.25
CCDC88C-202ENST00000334448 ENOX1Q8TC92 643 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-202ENST00000334448 BHMT2Q9H2M3 363 aa16.62■□□□□ 0.25
CCDC88C-202ENST00000334448 EXOC1Q9NV70 894 aa16.62■□□□□ 0.25
CCDC88C-202ENST00000334448 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.62■□□□□ 0.25
CCDC88C-202ENST00000334448 TTLL4Q14679 1199 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 OLFML2BQ68BL8 750 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 TAPT1Q6NXT6 567 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 MIS18BP1Q6P0N0 1132 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 SARM1Q6SZW1 724 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 C1orf186Q6ZWK4 172 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 DPP9Q86TI2 863 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 FBXO16Q8IX29 292 aaPredicted RBP16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 CCDC65Q8IXS2 484 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 ADSSL1Q8N142 457 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 BANK1Q8NDB2 785 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 EMID1Q96A84 441 aaPredicted RBP16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 TINF2Q9BSI4 451 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 TIPINQ9BVW5 301 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 SAMM50Q9Y512 469 aa16.61■□□□□ 0.25
CCDC88C-202ENST00000334448 KIAA1217Q5T5P2 1943 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 BECN2A8MW95 431 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 STBD1O95210 358 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 ARIH2O95376 493 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 GGPS1O95749 300 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 CD44P16070 742 aaKnown RBP16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 DEKP35659 375 aaKnown RBP16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 MAP2K2P36507 400 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 RARRES1P49788 294 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 ZNF131P52739 623 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 GIT2Q14161 759 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 UGCGQ16739 394 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 CELF3Q5SZQ8 465 aaKnown RBP16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 ISM2Q6H9L7 571 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 RINT1Q6NUQ1 792 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 CYFIP1Q7L576 1253 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 AOPEPQ8N6M6 819 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 AFAP1L1Q8TED9 768 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 MED15Q96RN5 788 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 RUSC1Q9BVN2 902 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 ABHD16BQ9H3Z7 469 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 BCAS3Q9H6U6 928 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 RWDD2AQ9UIY3 292 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 GJD2Q9UKL4 321 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 ODF2LQ9ULJ1 636 aa16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 MAFBQ9Y5Q3 323 aaPredicted RBP16.6■□□□□ 0.25
CCDC88C-202ENST00000334448 LOXHD1Q8IVV2 1947 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 GOLGA6L19H0YKK7 550 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 ZNF862O60290 1169 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 LGR5O75473 907 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 SNAI1O95863 264 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 SSBP05455 408 aaKnown RBP eCLIP16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 GAP43P17677 238 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 YWHABP31946 246 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 RGS2P41220 211 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 COASYQ13057 564 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 STIM1Q13586 685 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 DHX8Q14562 1220 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 CCDC60Q8IWA6 550 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 GUF1Q8N442 669 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 KIAA0895Q8NCT3 520 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 NPLOC4Q8TAT6 608 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms