RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 EMID1Q96A84 441 aaPredicted RBP20.4■□□□□ 0.86
HMGA1-201ENST00000311487 MMTAG2Q9BU76 263 aaKnown RBP20.4■□□□□ 0.86
HMGA1-201ENST00000311487 SPC25Q9HBM1 224 aa20.4■□□□□ 0.86
HMGA1-201ENST00000311487 A0A1B0GVL5 298 aa20.39■□□□□ 0.86
HMGA1-201ENST00000311487 POTEB3A0JP26 581 aa20.39■□□□□ 0.86
HMGA1-201ENST00000311487 SUPT20HL2P0C7V6 817 aa20.39■□□□□ 0.86
HMGA1-201ENST00000311487 CCT6AP40227 531 aaKnown RBP20.39■□□□□ 0.86
HMGA1-201ENST00000311487 KARSQ15046 597 aaKnown RBP20.39■□□□□ 0.86
HMGA1-201ENST00000311487 DGKDQ16760 1214 aa20.39■□□□□ 0.86
HMGA1-201ENST00000311487 MIS18BP1Q6P0N0 1132 aa20.39■□□□□ 0.86
HMGA1-201ENST00000311487 POTEBQ6S5H4 581 aa20.39■□□□□ 0.86
HMGA1-201ENST00000311487 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.39■□□□□ 0.85
HMGA1-201ENST00000311487 SLITRK3O94933 977 aa20.39■□□□□ 0.85
HMGA1-201ENST00000311487 LGALS2P05162 132 aa20.39■□□□□ 0.85
HMGA1-201ENST00000311487 ASGR1P07306 291 aa20.39■□□□□ 0.85
HMGA1-201ENST00000311487 PSAPP07602 524 aa20.39■□□□□ 0.85
HMGA1-201ENST00000311487 SPATA31C1P0DKV0 1188 aa20.39■□□□□ 0.85
HMGA1-201ENST00000311487 CPT1AP50416 773 aa20.39■□□□□ 0.85
HMGA1-201ENST00000311487 PDIA5Q14554 519 aa20.39■□□□□ 0.85
HMGA1-201ENST00000311487 POTEGQ6S5H5 508 aa20.39■□□□□ 0.85
HMGA1-201ENST00000311487 RASSF8Q8NHQ8 419 aa20.39■□□□□ 0.85
HMGA1-201ENST00000311487 ZNF302Q9NR11 478 aa20.39■□□□□ 0.85
HMGA1-201ENST00000311487 CUTAO60888 179 aa20.38■□□□□ 0.85
HMGA1-201ENST00000311487 ATG7O95352 703 aa20.38■□□□□ 0.85
HMGA1-201ENST00000311487 LONP1P36776 959 aaKnown RBP20.38■□□□□ 0.85
HMGA1-201ENST00000311487 JAK3P52333 1124 aa20.38■□□□□ 0.85
HMGA1-201ENST00000311487 CKAP2LQ8IYA6 745 aa20.38■□□□□ 0.85
HMGA1-201ENST00000311487 SMAP1Q8IYB5 467 aaPredicted RBP20.38■□□□□ 0.85
HMGA1-201ENST00000311487 PIGOQ8TEQ8 1089 aa20.38■□□□□ 0.85
HMGA1-201ENST00000311487 VTI1AQ96AJ9 217 aa20.38■□□□□ 0.85
HMGA1-201ENST00000311487 LXNQ9BS40 222 aa20.38■□□□□ 0.85
HMGA1-201ENST00000311487 C16orf70Q9BSU1 422 aa20.38■□□□□ 0.85
HMGA1-201ENST00000311487 RAB34Q9BZG1 259 aa20.38■□□□□ 0.85
HMGA1-201ENST00000311487 LMBRD1Q9NUN5 540 aa20.38■□□□□ 0.85
HMGA1-201ENST00000311487 Q9Y3F1 56 aa20.38■□□□□ 0.85
HMGA1-201ENST00000311487 A0A087X0B3 334 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 MSCO60682 206 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 PPFIA4O75335 1185 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 ATP4AP20648 1035 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 UBA7P41226 1012 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 STAT5BP51692 787 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 PDXDC2PQ6P474 469 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 RNF180Q86T96 592 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 CABP7Q86V35 215 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 ZBTB10Q96DT7 871 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 HSD17B14Q9BPX1 270 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 UPF3AQ9H1J1 476 aaKnown RBP20.37■□□□□ 0.85
HMGA1-201ENST00000311487 RNPEPQ9H4A4 650 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 GOLPH3LQ9H4A5 285 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 AZI2Q9H6S1 392 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 KIAA1024Q9UPX6 916 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 GOLGA6L4A6NEF3 574 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 ZNF862O60290 1169 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 SGPL1O95470 568 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 SFNP31947 248 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 EPHA7Q15375 998 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 KRT79Q5XKE5 535 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 KLHDC9Q8NEP7 349 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 DIS3LQ8TF46 1054 aaKnown RBP20.37■□□□□ 0.85
HMGA1-201ENST00000311487 LRRC15Q8TF66 581 aa20.37■□□□□ 0.85
HMGA1-201ENST00000311487 GJB1P08034 283 aa20.36■□□□□ 0.85
HMGA1-201ENST00000311487 PURAQ00577 322 aaKnown RBP20.36■□□□□ 0.85
HMGA1-201ENST00000311487 CCSAPQ6IQ19 270 aaPredicted RBP20.36■□□□□ 0.85
HMGA1-201ENST00000311487 KCNK18Q7Z418 384 aa20.36■□□□□ 0.85
HMGA1-201ENST00000311487 KAT2BQ92831 832 aa20.36■□□□□ 0.85
HMGA1-201ENST00000311487 TMEM106CQ9BVX2 250 aa20.36■□□□□ 0.85
HMGA1-201ENST00000311487 H3BRB1 525 aa20.35■□□□□ 0.85
HMGA1-201ENST00000311487 DHX8Q14562 1220 aaKnown RBP20.35■□□□□ 0.85
HMGA1-201ENST00000311487 BRDTQ58F21 947 aaPredicted RBP20.35■□□□□ 0.85
HMGA1-201ENST00000311487 PLA2G4FQ68DD2 849 aa20.35■□□□□ 0.85
HMGA1-201ENST00000311487 ADALQ6DHV7 355 aa20.35■□□□□ 0.85
HMGA1-201ENST00000311487 TUT1Q9H6E5 874 aaKnown RBP20.35■□□□□ 0.85
HMGA1-201ENST00000311487 BMP2KQ9NSY1 1161 aaPredicted RBP20.35■□□□□ 0.85
HMGA1-201ENST00000311487 DDX19AQ9NUU7 478 aaKnown RBP20.35■□□□□ 0.85
HMGA1-201ENST00000311487 IGKV6D-21A0A0A0MT36 114 aa20.35■□□□□ 0.85
HMGA1-201ENST00000311487 P4HBP07237 508 aaKnown RBP20.35■□□□□ 0.85
HMGA1-201ENST00000311487 EN2P19622 333 aaPredicted RBP20.35■□□□□ 0.85
HMGA1-201ENST00000311487 QARSP47897 775 aaKnown RBP20.35■□□□□ 0.85
HMGA1-201ENST00000311487 ACLYP53396 1101 aa20.35■□□□□ 0.85
HMGA1-201ENST00000311487 GRB10Q13322 594 aa20.35■□□□□ 0.85
HMGA1-201ENST00000311487 KIAA0753Q2KHM9 967 aa20.35■□□□□ 0.85
HMGA1-201ENST00000311487 KLHL40Q2TBA0 621 aa20.35■□□□□ 0.85
HMGA1-201ENST00000311487 FSIP1Q8NA03 581 aa20.35■□□□□ 0.85
HMGA1-201ENST00000311487 ZNF579Q8NAF0 562 aaKnown RBP20.35■□□□□ 0.85
HMGA1-201ENST00000311487 ERMNQ8TAM6 284 aa20.35■□□□□ 0.85
HMGA1-201ENST00000311487 PNMA5Q96PV4 448 aa20.35■□□□□ 0.85
HMGA1-201ENST00000311487 E9PMD0 336 aa20.34■□□□□ 0.85
HMGA1-201ENST00000311487 NDUFA8P51970 172 aa20.34■□□□□ 0.85
HMGA1-201ENST00000311487 IGBP1P78318 339 aa20.34■□□□□ 0.85
HMGA1-201ENST00000311487 PRKCEQ02156 737 aa20.34■□□□□ 0.85
HMGA1-201ENST00000311487 RESP18Q5W5W9 173 aa20.34■□□□□ 0.85
HMGA1-201ENST00000311487 ARRDC4Q8NCT1 418 aa20.34■□□□□ 0.85
HMGA1-201ENST00000311487 TRAPPC12Q8WVT3 735 aa20.34■□□□□ 0.85
HMGA1-201ENST00000311487 AK8Q96MA6 479 aa20.34■□□□□ 0.85
HMGA1-201ENST00000311487 POLD4Q9HCU8 107 aa20.34■□□□□ 0.85
HMGA1-201ENST00000311487 OGDHLQ9ULD0 1010 aa20.34■□□□□ 0.85
HMGA1-201ENST00000311487 TRPC6Q9Y210 931 aa20.34■□□□□ 0.85
HMGA1-201ENST00000311487 MAFBQ9Y5Q3 323 aaPredicted RBP20.34■□□□□ 0.85
HMGA1-201ENST00000311487 FRMPD3Q5JV73 1810 aa20.34■□□□□ 0.85
HMGA1-201ENST00000311487 LGR5O75473 907 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms