RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 LRRC10BA6NIK2 292 aa17.27■□□□□ 0.36
LSM6-201ENST00000296581 KRT18P05783 430 aaKnown RBP17.27■□□□□ 0.36
LSM6-201ENST00000296581 NR1I3Q14994 352 aa17.27■□□□□ 0.36
LSM6-201ENST00000296581 FOXR2Q6PJQ5 311 aa17.27■□□□□ 0.36
LSM6-201ENST00000296581 NCAPG2Q86XI2 1143 aa17.27■□□□□ 0.36
LSM6-201ENST00000296581 CTAGE1Q96RT6 745 aa17.27■□□□□ 0.36
LSM6-201ENST00000296581 THAP9Q9H5L6 903 aa17.27■□□□□ 0.36
LSM6-201ENST00000296581 P4HBP07237 508 aaKnown RBP17.27■□□□□ 0.35
LSM6-201ENST00000296581 GSDMDP57764 484 aa17.27■□□□□ 0.35
LSM6-201ENST00000296581 KRT76Q01546 638 aa17.27■□□□□ 0.35
LSM6-201ENST00000296581 FILIP1Q7Z7B0 1213 aa17.27■□□□□ 0.35
LSM6-201ENST00000296581 IRF2BP1Q8IU81 584 aa17.27■□□□□ 0.35
LSM6-201ENST00000296581 PIGOQ8TEQ8 1089 aa17.27■□□□□ 0.35
LSM6-201ENST00000296581 CDHR1Q96JP9 859 aa17.27■□□□□ 0.35
LSM6-201ENST00000296581 MS4A4AQ96JQ5 239 aa17.27■□□□□ 0.35
LSM6-201ENST00000296581 TRIM47Q96LD4 638 aa17.27■□□□□ 0.35
LSM6-201ENST00000296581 REEP2Q9BRK0 252 aa17.27■□□□□ 0.35
LSM6-201ENST00000296581 RUSC1Q9BVN2 902 aa17.27■□□□□ 0.35
LSM6-201ENST00000296581 ADD3Q9UEY8 706 aaKnown RBP17.27■□□□□ 0.35
LSM6-201ENST00000296581 SLC45A1Q9Y2W3 748 aa17.27■□□□□ 0.35
LSM6-201ENST00000296581 LYPLA2O95372 231 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 ERCC3P19447 782 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 JAK3P52333 1124 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 CNTN2Q02246 1040 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 ANKRD40Q6AI12 368 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 RINT1Q6NUQ1 792 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 RDM1Q8NG50 284 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 SENP7Q9BQF6 1050 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 SEMA6BQ9H3T3 888 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 PNMA3Q9UL41 463 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 CETPP11597 493 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 KCNA2P16389 499 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 SFNP31947 248 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 ALDH5A1P51649 535 aaPredicted RBP17.26■□□□□ 0.35
LSM6-201ENST00000296581 CACNB1Q02641 598 aaPredicted RBP17.26■□□□□ 0.35
LSM6-201ENST00000296581 HERC4Q5GLZ8 1057 aaPredicted RBP17.26■□□□□ 0.35
LSM6-201ENST00000296581 TCP11X2Q5H9J9 407 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 C1orf186Q6ZWK4 172 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 C2orf69Q8N8R5 385 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 BANK1Q8NDB2 785 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 GTF3C2Q8WUA4 911 aaPredicted RBP17.26■□□□□ 0.35
LSM6-201ENST00000296581 CACTINQ8WUQ7 758 aaKnown RBP17.26■□□□□ 0.35
LSM6-201ENST00000296581 ZSWIM4Q9H7M6 989 aa17.26■□□□□ 0.35
LSM6-201ENST00000296581 NFASCO94856 1347 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 SPATA31C2B4DYI2 1134 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 KCNJ18B7U540 433 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 CCNE2O96020 404 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 EDNRBP24530 442 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 GTF2A2P52657 109 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 KCNJ12Q14500 433 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 KRT31Q15323 416 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 Q3C1V9 767 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 GNPTABQ3T906 1256 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 ZNF746Q6NUN9 644 aaPredicted RBP17.25■□□□□ 0.35
LSM6-201ENST00000296581 MYOCDQ8IZQ8 938 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 FAM133AQ8N9E0 248 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 GLIS3Q8NEA6 775 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 KCND2Q9NZV8 630 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 WDR81Q562E7 1941 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 LRRC37A2A6NM11 1700 aa17.25■□□□□ 0.35
LSM6-201ENST00000296581 WDR64B1ANS9 1081 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 POTEB2H3BUK9 544 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 ZBTB39O15060 712 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 EIF3JO75822 258 aaKnown RBP17.24■□□□□ 0.35
LSM6-201ENST00000296581 CELF2O95319 508 aaKnown RBP17.24■□□□□ 0.35
LSM6-201ENST00000296581 EEF1GP26641 437 aaKnown RBP17.24■□□□□ 0.35
LSM6-201ENST00000296581 ICAM3P32942 547 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 QARSP47897 775 aaKnown RBP17.24■□□□□ 0.35
LSM6-201ENST00000296581 RAD51AP2Q09MP3 1159 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 STXBP2Q15833 593 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 LRRC8AQ8IWT6 810 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 ZNF710Q8N1W2 664 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 CSGALNACT2Q8N6G5 542 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 SRRTQ9BXP5 876 aaKnown RBP17.24■□□□□ 0.35
LSM6-201ENST00000296581 NMRK2Q9NPI5 230 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 SOWAHBA6NEL2 793 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 LRRC63Q05C16 580 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 LRRC41Q15345 812 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 SHCBP1Q8NEM2 672 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 ANKRD20A12PQ8NF67 263 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 MYRIPQ8NFW9 859 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 FGFBP2Q9BYJ0 223 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 R3HDMLQ9H3Y0 253 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 TCEAL9Q9UHQ7 104 aa17.24■□□□□ 0.35
LSM6-201ENST00000296581 LRMPQ12912 555 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 FILIP1LQ4L180 1135 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 MROH8Q9H579 483 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 DBR1Q9UK59 544 aaKnown RBP17.23■□□□□ 0.35
LSM6-201ENST00000296581 SAMM50Q9Y512 469 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 TRPM7Q96QT4 1865 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 DOCK5Q9H7D0 1870 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 CCL15-CCL14A0A0B4J2E2 113 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 GAP43P17677 238 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 PBX1P40424 430 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 COPB1P53618 953 aaKnown RBP17.23■□□□□ 0.35
LSM6-201ENST00000296581 ERVK-9P63128 1117 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 ERVK-24P63145 666 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 ARID5BQ14865 1188 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 CCL15Q16663 113 aa17.23■□□□□ 0.35
LSM6-201ENST00000296581 ZCWPW2Q504Y3 356 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms