RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 PCDHA13Q9Y5I0 950 aa26.43■■□□□ 1.82
TRIM54-201ENST00000296098 RSPH10B2B2RC85 870 aa26.42■■□□□ 1.82
TRIM54-201ENST00000296098 WNT10BO00744 389 aa26.42■■□□□ 1.82
TRIM54-201ENST00000296098 AKR1B10O60218 316 aa26.42■■□□□ 1.82
TRIM54-201ENST00000296098 RSPH10BP0C881 870 aa26.42■■□□□ 1.82
TRIM54-201ENST00000296098 MYBP10242 640 aa26.42■■□□□ 1.82
TRIM54-201ENST00000296098 EPS15P42566 896 aa26.42■■□□□ 1.82
TRIM54-201ENST00000296098 MAP3K10Q02779 954 aa26.42■■□□□ 1.82
TRIM54-201ENST00000296098 CTTNQ14247 550 aaKnown RBP26.42■■□□□ 1.82
TRIM54-201ENST00000296098 BMT2Q1RMZ1 405 aa26.42■■□□□ 1.82
TRIM54-201ENST00000296098 NBPF9Q3BBW0 867 aa26.42■■□□□ 1.82
TRIM54-201ENST00000296098 CEP55Q53EZ4 464 aa26.42■■□□□ 1.82
TRIM54-201ENST00000296098 MSANTD4Q8NCY6 345 aa26.42■■□□□ 1.82
TRIM54-201ENST00000296098 ANO9A1A5B4 782 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 MACROD2A1Z1Q3 448 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 ATP8B1O43520 1251 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 CALUO43852 315 aaPredicted RBP26.41■■□□□ 1.82
TRIM54-201ENST00000296098 GAS7O60861 476 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 GAP43P17677 238 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 BAG6P46379 1132 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 PRELPP51888 382 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 SETQ01105 290 aaPredicted RBP26.41■■□□□ 1.82
TRIM54-201ENST00000296098 BRD3Q15059 726 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 DYDC2Q96IM9 177 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 ARFGAP3Q9NP61 516 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 HDAC6Q9UBN7 1215 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 SAR1BQ9Y6B6 198 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 DUSP10Q9Y6W6 482 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 CCDC151A5D8V7 595 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 PDXKO00764 312 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 NOL4O94818 638 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 HOXD13P35453 343 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 SLC16A10Q8TF71 515 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 SYN2Q92777 582 aaPredicted RBP26.41■■□□□ 1.82
TRIM54-201ENST00000296098 NLRC4Q9NPP4 1024 aa26.41■■□□□ 1.82
TRIM54-201ENST00000296098 SSU72P8A0A1W2PR75 194 aa26.4■■□□□ 1.82
TRIM54-201ENST00000296098 PRPF6O94906 941 aaKnown RBP26.4■■□□□ 1.82
TRIM54-201ENST00000296098 MAPK8IP2Q13387 824 aaPredicted RBP26.4■■□□□ 1.82
TRIM54-201ENST00000296098 RINT1Q6NUQ1 792 aa26.4■■□□□ 1.82
TRIM54-201ENST00000296098 SLC30A10Q6XR72 485 aa26.4■■□□□ 1.82
TRIM54-201ENST00000296098 TPH2Q8IWU9 490 aa26.4■■□□□ 1.82
TRIM54-201ENST00000296098 ZNF341Q9BYN7 854 aa26.4■■□□□ 1.82
TRIM54-201ENST00000296098 MYOZ2Q9NPC6 264 aa26.4■■□□□ 1.82
TRIM54-201ENST00000296098 SLITRK3O94933 977 aa26.39■■□□□ 1.82
TRIM54-201ENST00000296098 SFMBT2Q5VUG0 894 aa26.39■■□□□ 1.82
TRIM54-201ENST00000296098 CIAPIN1Q6FI81 312 aa26.39■■□□□ 1.82
TRIM54-201ENST00000296098 FRMD5Q7Z6J6 570 aa26.39■■□□□ 1.82
TRIM54-201ENST00000296098 PIGOQ8TEQ8 1089 aa26.39■■□□□ 1.82
TRIM54-201ENST00000296098 WDR11Q9BZH6 1224 aa26.39■■□□□ 1.82
TRIM54-201ENST00000296098 OLFML3Q9NRN5 406 aa26.39■■□□□ 1.82
TRIM54-201ENST00000296098 TYW1Q9NV66 732 aaKnown RBP26.39■■□□□ 1.82
TRIM54-201ENST00000296098 GCNT3O95395 438 aa26.39■■□□□ 1.81
TRIM54-201ENST00000296098 PTGER2P43116 358 aa26.39■■□□□ 1.81
TRIM54-201ENST00000296098 POLR2FP61218 127 aaKnown RBP26.39■■□□□ 1.81
TRIM54-201ENST00000296098 SF3B2Q13435 895 aaKnown RBP26.39■■□□□ 1.81
TRIM54-201ENST00000296098 HGSNATQ68CP4 663 aa26.39■■□□□ 1.81
TRIM54-201ENST00000296098 GPIHBP1Q8IV16 184 aa26.39■■□□□ 1.81
TRIM54-201ENST00000296098 ZNF577Q9BSK1 485 aa26.39■■□□□ 1.81
TRIM54-201ENST00000296098 CRACR2AQ9BSW2 395 aa26.39■■□□□ 1.81
TRIM54-201ENST00000296098 CCPG1Q9ULG6 757 aa26.39■■□□□ 1.81
TRIM54-201ENST00000296098 ASTN1O14525 1302 aa26.39■■□□□ 1.81
TRIM54-201ENST00000296098 ICAM1P05362 532 aa26.38■■□□□ 1.81
TRIM54-201ENST00000296098 MUTP22033 750 aa26.38■■□□□ 1.81
TRIM54-201ENST00000296098 KCNH2Q12809 1159 aa26.38■■□□□ 1.81
TRIM54-201ENST00000296098 TDRD12Q587J7 1177 aaKnown RBP26.38■■□□□ 1.81
TRIM54-201ENST00000296098 TRIM58Q8NG06 486 aa26.38■■□□□ 1.81
TRIM54-201ENST00000296098 DEFB129Q9H1M3 183 aa26.38■■□□□ 1.81
TRIM54-201ENST00000296098 ARMCX3Q9UH62 379 aaPredicted RBP26.38■■□□□ 1.81
TRIM54-201ENST00000296098 FAM13AO94988 1023 aa26.38■■□□□ 1.81
TRIM54-201ENST00000296098 TBC1D8O95759 1140 aa26.38■■□□□ 1.81
TRIM54-201ENST00000296098 ASTE1Q2TB18 679 aaPredicted RBP26.38■■□□□ 1.81
TRIM54-201ENST00000296098 SLC9C1Q4G0N8 1177 aa26.38■■□□□ 1.81
TRIM54-201ENST00000296098 DEFB132Q7Z7B7 95 aa26.38■■□□□ 1.81
TRIM54-201ENST00000296098 PIM2Q9P1W9 311 aa26.38■■□□□ 1.81
TRIM54-201ENST00000296098 RAB21Q9UL25 225 aa26.38■■□□□ 1.81
TRIM54-201ENST00000296098 TACC1O75410 805 aa26.37■■□□□ 1.81
TRIM54-201ENST00000296098 SERPING1P05155 500 aa26.37■■□□□ 1.81
TRIM54-201ENST00000296098 HSD17B4P51659 736 aa26.37■■□□□ 1.81
TRIM54-201ENST00000296098 GABPB1Q06547 395 aaPredicted RBP26.37■■□□□ 1.81
TRIM54-201ENST00000296098 TXLNBQ8N3L3 684 aa26.37■■□□□ 1.81
TRIM54-201ENST00000296098 PNKPQ96T60 521 aa26.37■■□□□ 1.81
TRIM54-201ENST00000296098 UNC45AQ9H3U1 944 aa26.37■■□□□ 1.81
TRIM54-201ENST00000296098 FRMPD4Q14CM0 1322 aa26.37■■□□□ 1.81
TRIM54-201ENST00000296098 GOLGB1Q14789 3259 aaKnown RBP26.36■■□□□ 1.81
TRIM54-201ENST00000296098 NR3C1P04150 777 aa26.36■■□□□ 1.81
TRIM54-201ENST00000296098 ARP10275 920 aa26.36■■□□□ 1.81
TRIM54-201ENST00000296098 INPP5BP32019 993 aa26.36■■□□□ 1.81
TRIM54-201ENST00000296098 CKAP4Q07065 602 aaKnown RBP26.36■■□□□ 1.81
TRIM54-201ENST00000296098 C1orf186Q6ZWK4 172 aa26.36■■□□□ 1.81
TRIM54-201ENST00000296098 AGBL1Q96MI9 1066 aa26.36■■□□□ 1.81
TRIM54-201ENST00000296098 TEKT3Q9BXF9 490 aa26.36■■□□□ 1.81
TRIM54-201ENST00000296098 LOXHD1Q8IVV2 1947 aa26.36■■□□□ 1.81
TRIM54-201ENST00000296098 FER1L6Q2WGJ9 1857 aa26.36■■□□□ 1.81
TRIM54-201ENST00000296098 SHTN1A0MZ66 631 aa26.36■■□□□ 1.81
TRIM54-201ENST00000296098 PHF20L1A8MW92 1017 aa26.36■■□□□ 1.81
TRIM54-201ENST00000296098 EIF3DO15371 548 aaKnown RBP eCLIP26.36■■□□□ 1.81
TRIM54-201ENST00000296098 SLC16A3O15427 465 aaKnown RBP26.36■■□□□ 1.81
TRIM54-201ENST00000296098 RHOXF2BP0C7M4 288 aa26.36■■□□□ 1.81
TRIM54-201ENST00000296098 RPL13P26373 211 aaKnown RBP26.36■■□□□ 1.81
TRIM54-201ENST00000296098 RASA3Q14644 834 aa26.36■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms