RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PAXBP1Q9Y5B6 917 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 PLA2G6O60733 806 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 N4BP1O75113 896 aaKnown RBP12.74□□□□□ -0.37
VPS4A-201ENST00000254950 STAM2O75886 525 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 PEX3P56589 373 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 HERVK_113P62684 666 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 GPS2Q13227 327 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 ASIC2Q16515 512 aa12.74□□□□□ -0.37
VPS4A-201ENST00000254950 LSM14BQ9BX40 385 aaKnown RBP12.74□□□□□ -0.37
VPS4A-201ENST00000254950 MYMKA6NI61 221 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 M0QZ92 97 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 CLIC2O15247 247 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 TACC1O75410 805 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 TNNI1P19237 187 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 Q4G0T1 1027 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 FAM47CQ5HY64 1035 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 RRAGAQ7L523 313 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 PDCD2LQ9BRP1 358 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 CRACR2AQ9BSW2 395 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 SNED1Q8TER0 1413 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 RHOBTB3O94955 611 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 MARK3P27448 753 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 CETN2P41208 172 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 PAFAH1B1P43034 410 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 GCLCP48506 637 aaPredicted RBP12.73□□□□□ -0.37
VPS4A-201ENST00000254950 TRPC3Q13507 836 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 IQCB1Q15051 598 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 NAALADL2Q58DX5 795 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 RBM43Q6ZSC3 357 aaKnown RBP12.73□□□□□ -0.37
VPS4A-201ENST00000254950 TRIM6Q9C030 488 aaPredicted RBP12.73□□□□□ -0.37
VPS4A-201ENST00000254950 SPATC1LQ9H0A9 340 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 ATP6V0A4Q9HBG4 840 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 LZTFL1Q9NQ48 299 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 C4AP0C0L4 1744 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 UQCRHLA0A096LP55 91 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 EIF3JO75822 258 aaKnown RBP12.73□□□□□ -0.37
VPS4A-201ENST00000254950 UQCRHP07919 91 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 LRMPQ12912 555 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 KRT31Q15323 416 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 TCP11X2Q5H9J9 407 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 PROCA1Q8NCQ7 364 aaPredicted RBP12.73□□□□□ -0.37
VPS4A-201ENST00000254950 POLR3CQ9BUI4 534 aaPredicted RBP12.73□□□□□ -0.37
VPS4A-201ENST00000254950 LRP5O75197 1615 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 TRIM49BA6NDI0 452 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 GGPS1O95749 300 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 DNA2P51530 1060 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 PPIL2Q13356 520 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 CCDC127Q96BQ5 260 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 MROH8Q9H579 483 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 POLD4Q9HCU8 107 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 JADE2Q9NQC1 790 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 NRBP1Q9UHY1 535 aa12.73□□□□□ -0.37
VPS4A-201ENST00000254950 BCRP11274 1271 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 SFMBT2Q5VUG0 894 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 LRRC8AQ8IWT6 810 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 KIFAP3Q92845 792 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 GUCA1BQ9UMX6 200 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 INO80B-WBP1J3KQ70 363 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 EGFRP00533 1210 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 TXNP10599 105 aaKnown RBP12.72□□□□□ -0.37
VPS4A-201ENST00000254950 GRB10Q13322 594 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 CATSPERGQ6ZRH7 1159 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 CYFIP1Q7L576 1253 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 VSTM4Q8IW00 320 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 DHX40Q8IX18 779 aaKnown RBP12.72□□□□□ -0.37
VPS4A-201ENST00000254950 SMAP1Q8IYB5 467 aaPredicted RBP12.72□□□□□ -0.37
VPS4A-201ENST00000254950 ADPGKQ9BRR6 497 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 INO80BQ9C086 356 aaPredicted RBP12.72□□□□□ -0.37
VPS4A-201ENST00000254950 TAF1DQ9H5J8 278 aaPredicted RBP12.72□□□□□ -0.37
VPS4A-201ENST00000254950 TMCO5BA8MYB1 307 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 TNPO2O14787 897 aaKnown RBP12.72□□□□□ -0.37
VPS4A-201ENST00000254950 ARP10275 920 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 KLHL30Q0D2K2 578 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 EXOC3L4Q17RC7 722 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 PCNX4Q63HM2 1172 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 CATSPER3Q86XQ3 398 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 GOLGA6L1Q8N7Z2 621 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 RDM1Q8NG50 284 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 CNKSR2Q8WXI2 1034 aa12.72□□□□□ -0.37
VPS4A-201ENST00000254950 P2RX7Q99572 595 aaKnown RBP12.72□□□□□ -0.37
VPS4A-201ENST00000254950 MEIS2O14770 477 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 IRF6O14896 467 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 YWHABP31946 246 aaKnown RBP12.71□□□□□ -0.37
VPS4A-201ENST00000254950 GLIPR1L2Q4G1C9 344 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 CCDC122Q5T0U0 273 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 ADSSL1Q8N142 457 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 CEP63Q96MT8 703 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 SPATA33Q96N06 139 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 ASCC2Q9H1I8 757 aaPredicted RBP12.71□□□□□ -0.37
VPS4A-201ENST00000254950 PXMP2Q9NR77 195 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 AKT3Q9Y243 479 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 MYPNQ86TC9 1320 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 K7ERI5 159 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 KNOP1Q1ED39 458 aaKnown RBP12.71□□□□□ -0.37
VPS4A-201ENST00000254950 XKR3Q5GH77 459 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 ANKRD13CQ8N6S4 541 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 TCP11Q8WWU5 503 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 SEPT1Q8WYJ6 367 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 TNFRSF25Q93038 417 aa12.71□□□□□ -0.37
VPS4A-201ENST00000254950 PRIMPOLQ96LW4 560 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms