RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 RGL1Q9NZL6 768 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 TRIM10Q9UDY6 481 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 PUF60Q9UHX1 559 aaKnown RBP9.11□□□□□ -0.95
VAMP3-201ENST00000054666 TRAF3IP3Q9Y228 551 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 SMCHD1A6NHR9 2005 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 LOXHD1Q8IVV2 1947 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 FER1L6Q2WGJ9 1857 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 PDXKO00764 312 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 EPHB6O15197 1021 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 EPB41P11171 864 aaKnown RBP9.11□□□□□ -0.95
VAMP3-201ENST00000054666 BMS1Q14692 1282 aaKnown RBP9.11□□□□□ -0.95
VAMP3-201ENST00000054666 KRT222Q8N1A0 295 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 PRPF38AQ8NAV1 312 aaKnown RBP9.11□□□□□ -0.95
VAMP3-201ENST00000054666 TBC1D5Q92609 795 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 SECISBP2LQ93073 1101 aaKnown RBP9.11□□□□□ -0.95
VAMP3-201ENST00000054666 DYDC2Q96IM9 177 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 RUSC1Q9BVN2 902 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 ZSWIM4Q9H7M6 989 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 OLFML3Q9NRN5 406 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 TYW1Q9NV66 732 aaKnown RBP9.11□□□□□ -0.95
VAMP3-201ENST00000054666 ARMCX3Q9UH62 379 aaPredicted RBP9.11□□□□□ -0.95
VAMP3-201ENST00000054666 PNMA2Q9UL42 364 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 MYO6Q9UM54 1294 aa9.11□□□□□ -0.95
VAMP3-201ENST00000054666 FRMPD4Q14CM0 1322 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 ANO9A1A5B4 782 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 EIF3DO15371 548 aaKnown RBP eCLIP9.1□□□□□ -0.952e-6■□□□□ 9.5
VAMP3-201ENST00000054666 PPP1R12BO60237 982 aaPredicted RBP9.1□□□□□ -0.95
VAMP3-201ENST00000054666 MYBP10242 640 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 XRCC5P13010 732 aaKnown RBP9.1□□□□□ -0.95
VAMP3-201ENST00000054666 PTGER2P43116 358 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 CASP5P51878 434 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 CKAP4Q07065 602 aaKnown RBP9.1□□□□□ -0.95
VAMP3-201ENST00000054666 BMT2Q1RMZ1 405 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 SLC9C1Q4G0N8 1177 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 SFMBT2Q5VUG0 894 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 FRMD5Q7Z6J6 570 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 PIGOQ8TEQ8 1089 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 ALS2CR12Q96Q35 445 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 NACC1Q96RE7 527 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 PARVGQ9HBI0 331 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 METTL14Q9HCE5 456 aaKnown RBP9.1□□□□□ -0.95
VAMP3-201ENST00000054666 KCND2Q9NZV8 630 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 ARHGAP20Q9P2F6 1191 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 SEL1LQ9UBV2 794 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 UBE4BO95155 1302 aa9.1□□□□□ -0.95
VAMP3-201ENST00000054666 GOLGB1Q14789 3259 aaKnown RBP9.1□□□□□ -0.95
VAMP3-201ENST00000054666 RBBP6Q7Z6E9 1792 aaKnown RBP9.1□□□□□ -0.95
VAMP3-201ENST00000054666 SSU72P8A0A1W2PR75 194 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 MACROD2A1Z1Q3 448 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 RSPH10B2B2RC85 870 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 IPO5O00410 1097 aaKnown RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 SLC16A3O15427 465 aaKnown RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 TACC1O75410 805 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 PRPF6O94906 941 aaKnown RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 ZBTB7AO95365 584 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 ABL1P00519 1130 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 RSPH10BP0C881 870 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 EIF4A3P38919 411 aaKnown RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 HSD17B4P51659 736 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 ZNF280AP59817 542 aaPredicted RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 CYP27A1Q02318 531 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 EPHA7Q15375 998 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 RINT1Q6NUQ1 792 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 EPM2AIP1Q7L775 607 aaPredicted RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 MYCT1Q8N699 235 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 TRIM58Q8NG06 486 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 BAP1Q92560 729 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 SYN2Q92777 582 aaPredicted RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 RIT2Q99578 217 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 HSD17B14Q9BPX1 270 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 MXRA8Q9BRK3 442 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 KIAA1683Q9H0B3 1180 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 DEFB129Q9H1M3 183 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 UNC45AQ9H3U1 944 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 NLRC4Q9NPP4 1024 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 PPP1R1BQ9UD71 204 aaPredicted RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 PGAP2Q9UHJ9 254 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 ARHGEF35A5YM69 484 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 PHF20L1A8MW92 1017 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 CTNND1O60716 968 aaKnown RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 FLOT1O75955 427 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 SLITRK3O94933 977 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 AFPP02771 609 aaKnown RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 NR3C1P04150 777 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 PLEKP08567 350 aaPredicted RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 ALAS1P13196 640 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 INPP5BP32019 993 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 USP14P54578 494 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 POLR2FP61218 127 aaKnown RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 KCNMA1Q12791 1236 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 KCNH2Q12809 1159 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 DCAF17Q5H9S7 520 aaPredicted RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 DCAF15Q66K64 600 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 TRAPPC11Q7Z392 1133 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 CPXCR1Q8N123 301 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 CCDC155Q8N6L0 562 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 AGBL1Q96MI9 1066 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 CCDC43Q96MW1 224 aaKnown RBP9.09□□□□□ -0.95
VAMP3-201ENST00000054666 LXNQ9BS40 222 aa9.09□□□□□ -0.95
VAMP3-201ENST00000054666 ARFGAP3Q9NP61 516 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms