RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PYM1Q9BRP8 204 aaKnown RBP11.76□□□□□ -0.53
USP28-201ENST00000003302 CAPS2Q9BXY5 557 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 PSTPIP2Q9H939 334 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 DBNDD1Q9H9R9 158 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 BMP2KQ9NSY1 1161 aaPredicted RBP11.76□□□□□ -0.53
USP28-201ENST00000003302 EMILIN3Q9NT22 766 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 FAM169AQ9Y6X4 670 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 SLC12A3P55017 1021 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 FKBP3Q00688 224 aaKnown RBP11.76□□□□□ -0.53
USP28-201ENST00000003302 TUBB2AQ13885 445 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 CCDC84Q86UT8 332 aaPredicted RBP11.76□□□□□ -0.53
USP28-201ENST00000003302 TUBB2BQ9BVA1 445 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 MTFR1LQ9H019 292 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 CNOT8Q9UFF9 292 aaKnown RBP11.76□□□□□ -0.53
USP28-201ENST00000003302 ATP6V0A2Q9Y487 856 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 PJA2O43164 708 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 FNBP4Q8N3X1 1017 aaPredicted RBP11.75□□□□□ -0.53
USP28-201ENST00000003302 GBP3Q9H0R5 595 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 MYL1P05976 194 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 IL1R1P14778 569 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 QPCTQ16769 361 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 MEI1Q5TIA1 1274 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 CDC42EP5Q6NZY7 148 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 BARGINQ6ZT62 677 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 THRAP3Q9Y2W1 955 aaKnown RBP11.75□□□□□ -0.53
USP28-201ENST00000003302 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.75□□□□□ -0.53
USP28-201ENST00000003302 NMT1P30419 496 aaKnown RBP11.75□□□□□ -0.53
USP28-201ENST00000003302 ZNF211Q13398 564 aaPredicted RBP11.75□□□□□ -0.53
USP28-201ENST00000003302 DCAF12L1Q5VU92 463 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 SFMBT2Q5VUG0 894 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 KIAA0825Q8IV33 1275 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 ERVK-5Q9HDB9 667 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 SIX2Q9NPC8 291 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 PCDHB13Q9Y5F0 798 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 GAKO14976 1311 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 EIF3HO15372 352 aaKnown RBP eCLIP11.75□□□□□ -0.53
USP28-201ENST00000003302 HDLBPQ00341 1268 aaKnown RBP11.75□□□□□ -0.53
USP28-201ENST00000003302 CKAP4Q07065 602 aaKnown RBP11.75□□□□□ -0.53
USP28-201ENST00000003302 KLHL30Q0D2K2 578 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 NAB2Q15742 525 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 SLC18A3Q16572 532 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 ZNF572Q7Z3I7 529 aaPredicted RBP11.75□□□□□ -0.53
USP28-201ENST00000003302 MICALL1Q8N3F8 863 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 RDH13Q8NBN7 331 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 CUEDC2Q9H467 287 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 GGA1Q9UJY5 639 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 PCDHA1Q9Y5I3 950 aa11.75□□□□□ -0.53
USP28-201ENST00000003302 PVALEFA0A1B0GWK0 134 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 TMEM150BA6NC51 233 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 CHMP2AO43633 222 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 USO1O60763 962 aaKnown RBP11.74□□□□□ -0.53
USP28-201ENST00000003302 UCHL3P15374 230 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 IBSPP21815 317 aaPredicted RBP11.74□□□□□ -0.53
USP28-201ENST00000003302 SEPT2Q15019 361 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 TRAPPC3LQ5T215 181 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 TCERG1LQ5VWI1 586 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 APOBEC3HQ6NTF7 200 aaKnown RBP11.74□□□□□ -0.53
USP28-201ENST00000003302 ZDHHC14Q8IZN3 488 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 METTL13Q8N6R0 699 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 RPGRQ92834 1020 aaKnown RBP11.74□□□□□ -0.53
USP28-201ENST00000003302 TRIM51Q9BSJ1 452 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 USP40Q9NVE5 1235 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 SERPINB13Q9UIV8 391 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 LEMD3Q9Y2U8 911 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 SERPINB2P05120 415 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 TRIM49P0CI25 452 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 TRIM49CP0CI26 452 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 EEF2P13639 858 aaKnown RBP11.74□□□□□ -0.53
USP28-201ENST00000003302 PON1P27169 355 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 GIT2Q14161 759 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 GALNT17Q6IS24 598 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 NOC3LQ8WTT2 800 aaKnown RBP11.74□□□□□ -0.53
USP28-201ENST00000003302 NOX5Q96PH1 765 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 BHMT2Q9H2M3 363 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 RIC8AQ9NPQ8 531 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 ATF5Q9Y2D1 282 aaPredicted RBP11.74□□□□□ -0.53
USP28-201ENST00000003302 ASTN1O14525 1302 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 SCN9AQ15858 1988 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 ABCB4P21439 1286 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 MARCKSL1P49006 195 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 LRRC63Q05C16 580 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 MAEAQ7L5Y9 396 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 GDF3Q9NR23 364 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 TAF1LQ8IZX4 1826 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 A0A1W2PRG0 241 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 MARCH6O60337 910 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 AMPD3Q01432 767 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 CTTNQ14247 550 aaKnown RBP11.74□□□□□ -0.53
USP28-201ENST00000003302 PLS1Q14651 629 aa11.74□□□□□ -0.53
USP28-201ENST00000003302 DDX3XO00571 662 aaKnown RBP eCLIP11.73□□□□□ -0.531e-9■■■■□ 20
USP28-201ENST00000003302 DAPK3O43293 454 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 DHX9Q08211 1270 aaKnown RBP11.73□□□□□ -0.53
USP28-201ENST00000003302 FAM182AQ5T1J6 154 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 FAM114A1Q8IWE2 563 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 LRRC57Q8N9N7 239 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 UHMK1Q8TAS1 419 aaKnown RBP11.73□□□□□ -0.53
USP28-201ENST00000003302 MDM1Q8TC05 714 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 NAGPAQ9UK23 515 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 HDAC9Q9UKV0 1011 aa11.73□□□□□ -0.53
USP28-201ENST00000003302 PCDHGC5Q9Y5F6 944 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms