RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 RMDN1Q96DB5 314 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF594Q96JF6 807 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 TESK2Q96S53 571 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 KRT23Q9C075 422 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 VCXQ9H320 206 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MTRRQ9UBK8 725 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 GNPATO15228 680 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 SPTLC1O15269 473 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MOCS3O95396 460 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 IFNA8P32881 189 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 S100A5P33763 92 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 SKIV2L2P42285 1042 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 PIK3CBP42338 1070 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 SEC13P55735 322 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 CTDSPL2Q05D32 466 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 CACTIN-AS1Q8N1I8 211 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 LRRC8CQ8TDW0 803 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ACAP3Q96P50 834 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 KATNAL1Q9BW62 490 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 TLK1Q9UKI8 766 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 PCDHGA1Q9Y5H4 931 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MYO9BQ13459 2157 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ZPR1O75312 459 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 SLFN14P0C7P3 912 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 PTK7Q13308 1070 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 TDGQ13569 410 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 TAF5Q15542 800 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 DEPDC1Q5TB30 811 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 RAB12Q6IQ22 244 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 GIMAP8Q8ND71 665 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 KCNG4Q8TDN1 519 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MAML1Q92585 1016 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 HSPH1Q92598 858 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 VPS39Q96JC1 886 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 DNAJB1P25685 340 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MAP2K5Q13163 448 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF366Q8N895 744 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MAELQ96JY0 434 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 NAA15Q9BXJ9 866 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 CARD11Q9BXL7 1154 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 XPO7Q9UIA9 1087 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 SPEF1Q9Y4P9 236 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 SCN2AQ99250 2005 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 E7ENQ6 273 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 APAF1O14727 1248 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 RAPGEF3O95398 923 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MUTP22033 750 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ADAM17P78536 824 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 KRT35Q92764 455 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 OSBPL9Q96SU4 736 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 KIFC3Q9BVG8 833 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 LCMT1Q9UIC8 334 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 SH3GLB1Q9Y371 365 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ABCC9O60706 1549 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ESYT3A0FGR9 886 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 TARSL2A2RTX5 802 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 BACH1O14867 736 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 TSPAN6O43657 245 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 TBC1D12O60347 775 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 TCP1P17987 556 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ATF4P18848 351 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 CDKN1CP49918 316 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MLC1Q15049 377 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MUM1L1Q5H9M0 696 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 STK32AQ8WU08 396 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 DMAP1Q9NPF5 467 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 EHD2Q9NZN4 543 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 CBY1Q9Y3M2 126 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 PLTPP55058 493 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 BYSLQ13895 437 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 BRDTQ58F21 947 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 TMEM154Q6P9G4 183 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 SYCE1Q8N0S2 351 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 SUCLG2Q96I99 432 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 PSKH2Q96QS6 385 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 RWDD3Q9Y3V2 267 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MYH7P12883 1935 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 RTN3O95197 1032 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF45Q02386 682 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 BOLA3Q53S33 107 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ZBTB46Q86UZ6 589 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF75CPQ92670 426 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ARL8AQ96BM9 186 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 NMD3Q96D46 503 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 RRP36Q96EU6 259 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 PHACTR3Q96KR7 559 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 RPRD1AQ96P16 312 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 SAV1Q9H4B6 383 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 CLSTN2Q9H4D0 955 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MCM9Q9NXL9 1143 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 TOR1BO14657 336 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 NPR1P16066 1061 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 CWC27Q6UX04 472 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 STX6O43752 255 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 PHACTR2O75167 634 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 PDE6AP16499 860 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 PRKAR2BP31323 418 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 HNRNPH1P31943 449 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MAGEA10P43363 369 aaPredicted RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms