RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 KCTD1Q719H9 257 aa6.64□□□□□ -1.35
CD44-239ENST00000639002 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.64□□□□□ -1.35
CD44-239ENST00000639002 FAM124AQ86V42 546 aa6.64□□□□□ -1.35
CD44-239ENST00000639002 IGDCC4Q8TDY8 1250 aa6.64□□□□□ -1.35
CD44-239ENST00000639002 CD244Q9BZW8 370 aa6.64□□□□□ -1.35
CD44-239ENST00000639002 SMPD4Q9NXE4 827 aa6.64□□□□□ -1.35
CD44-239ENST00000639002 PODXL2Q9NZ53 605 aa6.64□□□□□ -1.35
CD44-239ENST00000639002 TRBV23-1A0A0A0MS06 115 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 FAM221BA6H8Z2 402 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 WNT9AO14904 365 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 CYP7B1O75881 506 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 IL18BPO95998 194 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 KNG1P01042 644 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 INSRRP14616 1297 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 PFKPQ01813 784 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 RBL2Q08999 1139 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 NFATC3Q12968 1075 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 ZNF827Q17R98 1081 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 SKIDA1Q1XH10 827 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 ZXDCQ2QGD7 858 aaPredicted RBP6.63□□□□□ -1.35
CD44-239ENST00000639002 NBPF6Q5VWK0 638 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 KLHL36Q8N4N3 616 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 PCDH19Q8TAB3 1148 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 PTPRN2Q92932 1015 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 NBPF4Q96M43 638 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 SAMD11Q96NU1 681 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 PTPN18Q99952 460 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 KCND1Q9NSA2 647 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 SIRPGQ9P1W8 387 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 PCDHA8Q9Y5H6 950 aa6.63□□□□□ -1.35
CD44-239ENST00000639002 FAM90A27PA6NNH2 459 aa6.62□□□□□ -1.35
CD44-239ENST00000639002 U2SURPO15042 1029 aaKnown RBP6.62□□□□□ -1.35
CD44-239ENST00000639002 LAMTOR5O43504 91 aa6.62□□□□□ -1.35
CD44-239ENST00000639002 AMY2AP04746 511 aa6.62□□□□□ -1.35
CD44-239ENST00000639002 AMY2BP19961 511 aa6.62□□□□□ -1.35
CD44-239ENST00000639002 RASA3Q14644 834 aa6.62□□□□□ -1.35
CD44-239ENST00000639002 MAMDC2Q7Z304 686 aaPredicted RBP6.62□□□□□ -1.35
CD44-239ENST00000639002 KBTBD2Q8IY47 623 aa6.62□□□□□ -1.35
CD44-239ENST00000639002 LOXL4Q96JB6 756 aa6.62□□□□□ -1.35
CD44-239ENST00000639002 C8orf49Q96NF6 230 aa6.62□□□□□ -1.35
CD44-239ENST00000639002 C8orf37Q96NL8 207 aa6.62□□□□□ -1.35
CD44-239ENST00000639002 WRNIP1Q96S55 665 aa6.62□□□□□ -1.35
CD44-239ENST00000639002 ZFP69BQ9UJL9 534 aa6.62□□□□□ -1.35
CD44-239ENST00000639002 ADAM29Q9UKF5 820 aa6.62□□□□□ -1.35
CD44-239ENST00000639002 ZNF536O15090 1300 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 ZNF839A8K0R7 811 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 ARVCFO00192 962 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 GPR42O15529 346 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 ENO2P09104 434 aaPredicted RBP6.61□□□□□ -1.35
CD44-239ENST00000639002 GTF2F1P35269 517 aaKnown RBP eCLIP6.61□□□□□ -1.35
CD44-239ENST00000639002 GLRBP48167 497 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 SUMO1P63165 101 aaKnown RBP6.61□□□□□ -1.35
CD44-239ENST00000639002 PAK1Q13153 545 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 SMAD2Q15796 467 aaKnown RBP6.61□□□□□ -1.35
CD44-239ENST00000639002 TTC9BQ8N6N2 239 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 STPG3Q8N7X2 389 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 KISS1RQ969F8 398 aaPredicted RBP6.61□□□□□ -1.35
CD44-239ENST00000639002 CDC6Q99741 560 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 ALG1Q9BT22 464 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 C1QTNF3Q9BXJ4 246 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 FTSJ1Q9UET6 329 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 CBLCQ9ULV8 474 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 ZDHHC9Q9Y397 364 aa6.61□□□□□ -1.35
CD44-239ENST00000639002 KDM2BQ8NHM5 1336 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.6□□□□□ -1.35
CD44-239ENST00000639002 MAN2B1O00754 1011 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 AQP7O14520 342 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 B4GALT4O60513 344 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 PYGMP11217 842 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 EPHB4P54760 987 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 PPP2CBP62714 309 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 PPP2CAP67775 309 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 ARHGAP36Q6ZRI8 547 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 DPH6Q7L8W6 267 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 OSTM1Q86WC4 334 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 GPR20Q99678 358 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 DHRS4Q9BTZ2 278 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 ARHGAP20Q9P2F6 1191 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 PPP1R1BQ9UD71 204 aaPredicted RBP6.6□□□□□ -1.35
CD44-239ENST00000639002 ST6GALNAC2Q9UJ37 374 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 SRPK3Q9UPE1 567 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 MYRFQ9Y2G1 1151 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 PCDHA9Q9Y5H5 950 aa6.6□□□□□ -1.35
CD44-239ENST00000639002 CHGBP05060 677 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 ZNF20P17024 532 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 DBPQ10586 325 aaPredicted RBP6.59□□□□□ -1.35
CD44-239ENST00000639002 ICAM4Q14773 271 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 SURF1Q15526 300 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 GPR19Q15760 415 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 BTBD8Q5XKL5 378 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 CPZQ66K79 652 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 GLB1LQ6UWU2 654 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 Q6ZUG5 572 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 MTDHQ86UE4 582 aaKnown RBP6.59□□□□□ -1.35
CD44-239ENST00000639002 AJUBAQ96IF1 538 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 CD248Q9HCU0 757 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 SLC39A2Q9NP94 309 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 MRPS23Q9Y3D9 190 aaKnown RBP6.59□□□□□ -1.35
CD44-239ENST00000639002 NUB1Q9Y5A7 615 aa6.59□□□□□ -1.35
CD44-239ENST00000639002 SRGAP2CP0DJJ0 459 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms