RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SMTNP53814 917 aa17.38■□□□□ 0.37
CPSF1-213ENST00000620219 CNGA4Q8IV77 575 aa17.38■□□□□ 0.37
CPSF1-213ENST00000620219 FAM237AA0A1B0GTK4 181 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 EPB41P11171 864 aaKnown RBP17.37■□□□□ 0.37
CPSF1-213ENST00000620219 IGBP1P78318 339 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 SYTL5Q8TDW5 730 aaPredicted RBP17.37■□□□□ 0.37
CPSF1-213ENST00000620219 RRAGCQ9HB90 399 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 ADD3Q9UEY8 706 aaKnown RBP17.37■□□□□ 0.37
CPSF1-213ENST00000620219 FRMD4BQ9Y2L6 1034 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 CELF2O95319 508 aaKnown RBP17.37■□□□□ 0.37
CPSF1-213ENST00000620219 RBL2Q08999 1139 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 MXRA8Q9BRK3 442 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 PCIF1Q9H4Z3 704 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 PPP1R3GB7ZBB8 358 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 ZBTB39O15060 712 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 E2F4Q16254 413 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 ANKRD40Q6AI12 368 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 SWSAP1Q6NVH7 229 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 RANBP17Q9H2T7 1088 aaKnown RBP17.37■□□□□ 0.37
CPSF1-213ENST00000620219 STXBP2Q15833 593 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 TCP11X2Q5H9J9 407 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 OPTNQ96CV9 577 aa17.37■□□□□ 0.37
CPSF1-213ENST00000620219 CALUO43852 315 aaPredicted RBP17.36■□□□□ 0.37
CPSF1-213ENST00000620219 NAALADL2Q58DX5 795 aa17.36■□□□□ 0.37
CPSF1-213ENST00000620219 MTMR9Q96QG7 549 aa17.36■□□□□ 0.37
CPSF1-213ENST00000620219 GABBR1Q9UBS5 961 aa17.36■□□□□ 0.37
CPSF1-213ENST00000620219 PGK2P07205 417 aa17.36■□□□□ 0.37
CPSF1-213ENST00000620219 SARSP49591 514 aaKnown RBP17.36■□□□□ 0.37
CPSF1-213ENST00000620219 OTUD6AQ7L8S5 288 aa17.36■□□□□ 0.37
CPSF1-213ENST00000620219 PARVGQ9HBI0 331 aa17.36■□□□□ 0.37
CPSF1-213ENST00000620219 ERO1BQ86YB8 467 aa17.36■□□□□ 0.37
CPSF1-213ENST00000620219 METTL13Q8N6R0 699 aa17.36■□□□□ 0.37
CPSF1-213ENST00000620219 DRC1Q96MC2 740 aa17.36■□□□□ 0.37
CPSF1-213ENST00000620219 PNMA5Q96PV4 448 aa17.36■□□□□ 0.37
CPSF1-213ENST00000620219 KIF5CO60282 957 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 MMP14P50281 582 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 HSP90AA2PQ14568 343 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-213ENST00000620219 IL31RAQ8NI17 732 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 IFT74Q96LB3 600 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 P2RX7Q99572 595 aaKnown RBP17.35■□□□□ 0.37
CPSF1-213ENST00000620219 KBTBD4Q9NVX7 518 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 ABT1Q9ULW3 272 aaKnown RBP17.35■□□□□ 0.37
CPSF1-213ENST00000620219 TRPC6Q9Y210 931 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 RIPK3Q9Y572 518 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 PADI6Q6TGC4 694 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 BTNL9Q6UXG8 535 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 CAGE1Q8TC20 777 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 ZNF668Q96K58 619 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-213ENST00000620219 CCDC42Q96M95 316 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 TEPSINQ96N21 525 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 SLC38A10Q9HBR0 1119 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 RSPH10B2B2RC85 870 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 RSPH10BP0C881 870 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 POLGP54098 1239 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-213ENST00000620219 FKBP3Q00688 224 aaKnown RBP17.35■□□□□ 0.37
CPSF1-213ENST00000620219 CYFIP1Q7L576 1253 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 ADSSL1Q8N142 457 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 REEP2Q9BRK0 252 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 ARMCX3Q9UH62 379 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-213ENST00000620219 GUCA1BQ9UMX6 200 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 EML1O00423 815 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 FDX1P10109 184 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 NMT1P30419 496 aaKnown RBP17.35■□□□□ 0.37
CPSF1-213ENST00000620219 PMS1P54277 932 aaKnown RBP17.35■□□□□ 0.37
CPSF1-213ENST00000620219 PEX3P56589 373 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 CCZ1BP86790 482 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 CCZ1P86791 482 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-213ENST00000620219 PNMA8AQ86V59 439 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-213ENST00000620219 KSR1Q8IVT5 923 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 ZBTB9Q96C00 473 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 WNK4Q96J92 1243 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 UNC45AQ9H3U1 944 aa17.35■□□□□ 0.37
CPSF1-213ENST00000620219 QARSP47897 775 aaKnown RBP17.34■□□□□ 0.37
CPSF1-213ENST00000620219 CETN1Q12798 172 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 RRAGAQ7L523 313 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 ATP6V0A1Q93050 837 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 C7orf25Q9BPX7 421 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 LRRIQ4A6NIV6 560 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 SOWAHDA6NJG2 315 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 WDR64B1ANS9 1081 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 CCDC175P0C221 793 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 DSG3P32926 999 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 NAV1Q8NEY1 1877 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 CCDC127Q96BQ5 260 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 PPP1R16BQ96T49 567 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 TBC1D22BQ9NU19 505 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 ZNF831Q5JPB2 1677 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 PVALEFA0A1B0GWK0 134 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 RHOBTB3O94955 611 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 RPA1P27694 616 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 NPEPPSP55786 919 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 CNTN2Q02246 1040 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 TKFCQ3LXA3 575 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 PLA2G4FQ68DD2 849 aa17.34■□□□□ 0.37
CPSF1-213ENST00000620219 P4HBP07237 508 aaKnown RBP17.33■□□□□ 0.37
CPSF1-213ENST00000620219 DNM2P50570 870 aa17.33■□□□□ 0.37
CPSF1-213ENST00000620219 MTF1Q14872 753 aa17.33■□□□□ 0.37
CPSF1-213ENST00000620219 TBX3O15119 743 aa17.33■□□□□ 0.37
CPSF1-213ENST00000620219 USP2O75604 605 aaPredicted RBP17.33■□□□□ 0.37
CPSF1-213ENST00000620219 CCNA1P78396 465 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms