RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 SETD4Q9NVD3 440 aa5.99□□□□□ -1.45
VRK3-226ENST00000602029 SEC63Q9UGP8 760 aaKnown RBP5.99□□□□□ -1.45
VRK3-226ENST00000602029 LRFN2Q9ULH4 789 aa5.99□□□□□ -1.45
VRK3-226ENST00000602029 NCOR2Q9Y618 2525 aa5.99□□□□□ -1.45
VRK3-226ENST00000602029 ZMYM6O95789 1325 aa5.99□□□□□ -1.45
VRK3-226ENST00000602029 GVINP1Q7Z2Y8 2422 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 GRXCR2A6NFK2 248 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 STXBP3O00186 592 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 PPFIA3O75145 1194 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 FGRP09769 529 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 FOXK2Q01167 660 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 HDAC1Q13547 482 aaPredicted RBP5.98□□□□□ -1.45
VRK3-226ENST00000602029 NEDD9Q14511 834 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 MBTPS1Q14703 1052 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 C8orf34Q49A92 452 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 PAN2Q504Q3 1202 aaKnown RBP5.98□□□□□ -1.45
VRK3-226ENST00000602029 IER5LQ5T953 404 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 MYSM1Q5VVJ2 828 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 NFXL1Q6ZNB6 911 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 SERINC5Q86VE9 423 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 SUGP1Q8IWZ8 645 aaKnown RBP5.98□□□□□ -1.45
VRK3-226ENST00000602029 STAG2Q8N3U4 1231 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 IL31RAQ8NI17 732 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 APBB2Q92870 758 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 GPKOWQ92917 476 aaPredicted RBP eCLIP5.98□□□□□ -1.45
VRK3-226ENST00000602029 EMID1Q96A84 441 aaPredicted RBP5.98□□□□□ -1.45
VRK3-226ENST00000602029 PABPC5Q96DU9 382 aaKnown RBP5.98□□□□□ -1.45
VRK3-226ENST00000602029 MFSD14AQ96MC6 490 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 PIGSQ96S52 555 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 USP26Q9BXU7 913 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 FAM49AQ9H0Q0 323 aaPredicted RBP5.98□□□□□ -1.45
VRK3-226ENST00000602029 UPF2Q9HAU5 1272 aaKnown RBP5.98□□□□□ -1.45
VRK3-226ENST00000602029 FAM86C1Q9NVL1 165 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 DAXXQ9UER7 740 aaPredicted RBP5.98□□□□□ -1.45
VRK3-226ENST00000602029 TCEAL9Q9UHQ7 104 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 MUTYHQ9UIF7 546 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 TRPC6Q9Y210 931 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 GINS2Q9Y248 185 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 RWDD3Q9Y3V2 267 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 SPTBN2O15020 2390 aa5.98□□□□□ -1.45
VRK3-226ENST00000602029 CHD6Q8TD26 2715 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 TANC1Q9C0D5 1861 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 H3BNC9 293 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 FIBPO43427 364 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 NCK2O43639 380 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 TGFB3P10600 412 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 NOVP48745 357 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 HSD17B4P51659 736 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 SP2Q02086 613 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 RBL2Q08999 1139 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 PPFIA1Q13136 1202 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 BECN1Q14457 450 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 GPNMBQ14956 572 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 WTAPQ15007 396 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 TRIM71Q2Q1W2 868 aaKnown RBP5.97□□□□□ -1.45
VRK3-226ENST00000602029 PLEKHG4Q58EX7 1191 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 HFE2Q6ZVN8 426 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 CATIPQ7Z7H3 387 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 RBM23Q86U06 439 aaKnown RBP5.97□□□□□ -1.45
VRK3-226ENST00000602029 NLRX1Q86UT6 975 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 VSIG10LQ86VR7 867 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 ADHFE1Q8IWW8 467 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 TMEM87AQ8NBN3 555 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 TOP1MTQ969P6 601 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 RRP36Q96EU6 259 aaKnown RBP5.97□□□□□ -1.45
VRK3-226ENST00000602029 CTAGE1Q96RT6 745 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 RNPEPQ9H4A4 650 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 ALG13Q9NP73 1137 aaKnown RBP5.97□□□□□ -1.45
VRK3-226ENST00000602029 ZSWIM5Q9P217 1185 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 CD207Q9UJ71 328 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 CHD8Q9HCK8 2581 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 ADGRA3Q8IWK6 1321 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 ACACBO00763 2458 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 ATRXP46100 2492 aa5.97□□□□□ -1.45
VRK3-226ENST00000602029 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.96□□□□□ -1.46
VRK3-226ENST00000602029 HAS3O00219 553 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 GRM6O15303 877 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 GFRA3O60609 400 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 CAND2O75155 1236 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 STAG3L1P0CL83 205 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 SP100P23497 879 aaPredicted RBP5.96□□□□□ -1.46
VRK3-226ENST00000602029 GTF2F1P35269 517 aaKnown RBP eCLIP5.96□□□□□ -1.46
VRK3-226ENST00000602029 IRS1P35568 1242 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 TCF7P36402 384 aaPredicted RBP5.96□□□□□ -1.46
VRK3-226ENST00000602029 BMPR1AP36894 532 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 NT5C2P49902 561 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 HTRA4P83105 476 aaPredicted RBP5.96□□□□□ -1.46
VRK3-226ENST00000602029 ZP2Q05996 745 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 TMEM62Q0P6H9 643 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 TCF15Q12870 199 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 HIC1Q14526 733 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 TAF2Q6P1X5 1199 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 CASC1Q6TDU7 716 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 METTL7BQ6UX53 244 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 STOX1Q6ZVD7 989 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 TRMT1LQ7Z2T5 733 aaKnown RBP5.96□□□□□ -1.46
VRK3-226ENST00000602029 CHD1LQ86WJ1 897 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 CTCFLQ8NI51 663 aaPredicted RBP5.96□□□□□ -1.46
VRK3-226ENST00000602029 LMBR1Q8WVP7 490 aa5.96□□□□□ -1.46
VRK3-226ENST00000602029 DNAJB3Q8WWF6 145 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms