RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ACTN4O43707 911 aaKnown RBP17.32■□□□□ 0.36
UPF1-206ENST00000598471 CYP2B6P20813 491 aa17.32■□□□□ 0.36
UPF1-206ENST00000598471 CAP1Q01518 475 aa17.32■□□□□ 0.36
UPF1-206ENST00000598471 GRB10Q13322 594 aa17.32■□□□□ 0.36
UPF1-206ENST00000598471 IRF5Q13568 498 aa17.32■□□□□ 0.36
UPF1-206ENST00000598471 ARHGEF6Q15052 776 aa17.32■□□□□ 0.36
UPF1-206ENST00000598471 E2F4Q16254 413 aa17.32■□□□□ 0.36
UPF1-206ENST00000598471 TMEM119Q4V9L6 283 aa17.32■□□□□ 0.36
UPF1-206ENST00000598471 OLFML2BQ68BL8 750 aa17.32■□□□□ 0.36
UPF1-206ENST00000598471 SMAP1Q8IYB5 467 aaPredicted RBP17.32■□□□□ 0.36
UPF1-206ENST00000598471 TRIM47Q96LD4 638 aa17.32■□□□□ 0.36
UPF1-206ENST00000598471 EIF2AK1Q9BQI3 630 aaKnown RBP17.32■□□□□ 0.36
UPF1-206ENST00000598471 ABHD16BQ9H3Z7 469 aa17.32■□□□□ 0.36
UPF1-206ENST00000598471 SLC9A2Q9UBY0 812 aa17.32■□□□□ 0.36
UPF1-206ENST00000598471 EML1O00423 815 aa17.31■□□□□ 0.36
UPF1-206ENST00000598471 UBA1P22314 1058 aaKnown RBP17.31■□□□□ 0.36
UPF1-206ENST00000598471 HOXD10P28358 340 aa17.31■□□□□ 0.36
UPF1-206ENST00000598471 ERO1AQ96HE7 468 aa17.31■□□□□ 0.36
UPF1-206ENST00000598471 PNMA5Q96PV4 448 aa17.31■□□□□ 0.36
UPF1-206ENST00000598471 PLIN2Q99541 437 aa17.31■□□□□ 0.36
UPF1-206ENST00000598471 LRRC27Q9C0I9 530 aa17.31■□□□□ 0.36
UPF1-206ENST00000598471 GJD2Q9UKL4 321 aa17.31■□□□□ 0.36
UPF1-206ENST00000598471 POTEB3A0JP26 581 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 DKC1O60832 514 aaKnown RBP eCLIP17.3■□□□□ 0.36
UPF1-206ENST00000598471 FKTNO75072 461 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 MED24O75448 989 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 GGPS1O95749 300 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 TXNP10599 105 aaKnown RBP17.3■□□□□ 0.36
UPF1-206ENST00000598471 XRCC5P13010 732 aaKnown RBP17.3■□□□□ 0.36
UPF1-206ENST00000598471 AMPD3Q01432 767 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 POSTNQ15063 836 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 PDXDC2PQ6P474 469 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 POTEBQ6S5H4 581 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 METTL7BQ6UX53 244 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 TRMT44Q8IYL2 757 aaKnown RBP17.3■□□□□ 0.36
UPF1-206ENST00000598471 DYDC2Q96IM9 177 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 MLXIPQ9HAP2 919 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 DDX41Q9UJV9 622 aaKnown RBP17.3■□□□□ 0.36
UPF1-206ENST00000598471 ZHX1Q9UKY1 873 aaPredicted RBP17.3■□□□□ 0.36
UPF1-206ENST00000598471 KIAA1024Q9UPX6 916 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 PCDHA10Q9Y5I2 948 aa17.3■□□□□ 0.36
UPF1-206ENST00000598471 MGAMO43451 1857 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 RBM47A0AV96 593 aaKnown RBP17.29■□□□□ 0.36
UPF1-206ENST00000598471 SYCE3A1L190 88 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 SMC2O95347 1197 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 SNAI1O95863 264 aaPredicted RBP17.29■□□□□ 0.36
UPF1-206ENST00000598471 GNRH1P01148 92 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 MYL1P05976 194 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 P4HBP07237 508 aaKnown RBP17.29■□□□□ 0.36
UPF1-206ENST00000598471 PSAPP07602 524 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 CTGFP29279 349 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 CYP4A11Q02928 519 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 ACVR2BQ13705 512 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 MIS18BP1Q6P0N0 1132 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 RBM43Q6ZSC3 357 aaKnown RBP17.29■□□□□ 0.36
UPF1-206ENST00000598471 SV2BQ7L1I2 683 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 CYFIP1Q7L576 1253 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 CATSPER3Q86XQ3 398 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 LARP4BQ92615 738 aaKnown RBP17.29■□□□□ 0.36
UPF1-206ENST00000598471 PAGE5Q96GU1 130 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 HSD17B14Q9BPX1 270 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 ARHGAP39Q9C0H5 1083 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 DNM3Q9UQ16 869 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 KIAA1217Q5T5P2 1943 aa17.29■□□□□ 0.36
UPF1-206ENST00000598471 POTEFA5A3E0 1075 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 CCNE2O96020 404 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 SPATA31C1P0DKV0 1188 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 AFMP43652 599 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 QARSP47897 775 aaKnown RBP17.28■□□□□ 0.36
UPF1-206ENST00000598471 ACTR2P61160 394 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 SP2Q02086 613 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 SP4Q02446 784 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 NAALADL2Q58DX5 795 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 TAPT1Q6NXT6 567 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 CCDC62Q6P9F0 684 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 POTEGQ6S5H5 508 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 SASS6Q6UVJ0 657 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 SH3RF1Q7Z6J0 888 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 TPH2Q8IWU9 490 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 DHX37Q8IY37 1157 aaKnown RBP17.28■□□□□ 0.36
UPF1-206ENST00000598471 CKAP2LQ8IYA6 745 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 CD99L2Q8TCZ2 262 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 RAD54LQ92698 747 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 ATP6V0A1Q93050 837 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 LXNQ9BS40 222 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 ZSWIM4Q9H7M6 989 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 RGL1Q9NZL6 768 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 NRBP1Q9UHY1 535 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 CASP8AP2Q9UKL3 1982 aa17.28■□□□□ 0.36
UPF1-206ENST00000598471 NOP56O00567 594 aaKnown RBP17.27■□□□□ 0.36
UPF1-206ENST00000598471 NKRFO15226 690 aaKnown RBP eCLIP17.27■□□□□ 0.36
UPF1-206ENST00000598471 GTPBP6O43824 516 aaPredicted RBP17.27■□□□□ 0.36
UPF1-206ENST00000598471 FARP2O94887 1054 aaPredicted RBP17.27■□□□□ 0.36
UPF1-206ENST00000598471 ARIH2O95376 493 aa17.27■□□□□ 0.36
UPF1-206ENST00000598471 GH1P01241 217 aa17.27■□□□□ 0.36
UPF1-206ENST00000598471 FLT3LGP49771 235 aa17.27■□□□□ 0.36
UPF1-206ENST00000598471 ZNF445P59923 1031 aa17.27■□□□□ 0.36
UPF1-206ENST00000598471 PSMC5P62195 406 aa17.27■□□□□ 0.36
UPF1-206ENST00000598471 CTTNQ14247 550 aaKnown RBP17.27■□□□□ 0.36
UPF1-206ENST00000598471 LY6KQ17RY6 165 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 143.5 ms