RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 SMAP1Q8IYB5 467 aaPredicted RBP12.2□□□□□ -0.46
USE1-204ENST00000594399 RDM1Q8NG50 284 aa12.2□□□□□ -0.46
USE1-204ENST00000594399 SYMPKQ92797 1274 aaKnown RBP12.2□□□□□ -0.46
USE1-204ENST00000594399 COPS5Q92905 334 aa12.2□□□□□ -0.46
USE1-204ENST00000594399 SPATA33Q96N06 139 aa12.2□□□□□ -0.46
USE1-204ENST00000594399 TMEM106CQ9BVX2 250 aa12.2□□□□□ -0.46
USE1-204ENST00000594399 SAMM50Q9Y512 469 aa12.2□□□□□ -0.46
USE1-204ENST00000594399 STK24Q9Y6E0 443 aa12.2□□□□□ -0.46
USE1-204ENST00000594399 PP2D1A8MPX8 630 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 NOP56O00567 594 aaKnown RBP12.19□□□□□ -0.46
USE1-204ENST00000594399 CCNE2O96020 404 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 CNGA1P29973 690 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 CCND3P30281 292 aaPredicted RBP12.19□□□□□ -0.46
USE1-204ENST00000594399 MCM4P33991 863 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 ACTR2P61160 394 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 UBE2HP62256 183 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 LAMC2Q13753 1193 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 TPRNQ4KMQ1 711 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 SPECC1Q5M775 1068 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 TMEM63BQ5T3F8 832 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 RESP18Q5W5W9 173 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 SHC4Q6S5L8 630 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 TLK2Q86UE8 772 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 OR6J1Q8NGC5 347 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 ERMNQ8TAM6 284 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 SNX29Q8TEQ0 813 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 SH3TC2Q8TF17 1288 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 MRPS27Q92552 414 aaKnown RBP12.19□□□□□ -0.46
USE1-204ENST00000594399 EMID1Q96A84 441 aaPredicted RBP12.19□□□□□ -0.46
USE1-204ENST00000594399 LENG1Q96BZ8 264 aaPredicted RBP12.19□□□□□ -0.46
USE1-204ENST00000594399 ZNF333Q96JL9 665 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 BCAS3Q9H6U6 928 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 FAM13BQ9NYF5 915 aa12.19□□□□□ -0.46
USE1-204ENST00000594399 GNEQ9Y223 722 aaKnown RBP12.19□□□□□ -0.46
USE1-204ENST00000594399 KDM3AQ9Y4C1 1321 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 EML1O00423 815 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 SLC26A4O43511 780 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 GADD45BO75293 160 aaPredicted RBP12.18□□□□□ -0.46
USE1-204ENST00000594399 DUSP11O75319 330 aaKnown RBP12.18□□□□□ -0.46
USE1-204ENST00000594399 PSAPP07602 524 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 RARBP10826 455 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 PTMSP20962 102 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 CMA1P23946 247 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 UBA7P41226 1012 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 EPHA7Q15375 998 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 HSDL1Q3SXM5 330 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 KRT79Q5XKE5 535 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 MIS18BP1Q6P0N0 1132 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 CCDC73Q6ZRK6 1079 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 CABP7Q86V35 215 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 FSIP1Q8NA03 581 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 PPTC7Q8NI37 304 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 NEK9Q8TD19 979 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 EIF2AK1Q9BQI3 630 aaKnown RBP12.18□□□□□ -0.46
USE1-204ENST00000594399 DISC1Q9NRI5 854 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 LMBRD1Q9NUN5 540 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 Q9Y3F1 56 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 PCDHA10Q9Y5I2 948 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 FRMPD3Q5JV73 1810 aa12.18□□□□□ -0.46
USE1-204ENST00000594399 MSCO60682 206 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 SUPT20HL2P0C7V6 817 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 PFKFB1P16118 471 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 PTGS1P23219 599 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 CDC25AP30304 524 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 CCT6AP40227 531 aaKnown RBP12.17□□□□□ -0.46
USE1-204ENST00000594399 USP49Q70CQ1 688 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 RASSF8Q8NHQ8 419 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 CALML4Q96GE6 196 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 EPSTI1Q96J88 318 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 CDK5RAP3Q96JB5 506 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 GPR20Q99678 358 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 MMTAG2Q9BU76 263 aaKnown RBP12.17□□□□□ -0.46
USE1-204ENST00000594399 POLR3CQ9BUI4 534 aaPredicted RBP12.17□□□□□ -0.46
USE1-204ENST00000594399 CCSER1Q9C0I3 900 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 AP5M1Q9H0R1 490 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 GOLPH3LQ9H4A5 285 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 TUFT1Q9NNX1 390 aa12.17□□□□□ -0.46
USE1-204ENST00000594399 HMX1Q9NP08 348 aaPredicted RBP12.17□□□□□ -0.46
USE1-204ENST00000594399 DDX20Q9UHI6 824 aaKnown RBP12.17□□□□□ -0.46
USE1-204ENST00000594399 EMSYQ7Z589 1322 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 SYNRGQ9UMZ2 1314 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 IGSF9BQ9UPX0 1349 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 FAM237AA0A1B0GTK4 181 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 A0A1B0GVL5 298 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 BACH1O14867 736 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 DYNC1LI2O43237 492 aaPredicted RBP12.16□□□□□ -0.46
USE1-204ENST00000594399 ATG7O95352 703 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 MMP3P08254 477 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 RPA1P27694 616 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 TCF7P36402 384 aaPredicted RBP12.16□□□□□ -0.46
USE1-204ENST00000594399 CPT1AP50416 773 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 CYP4A11Q02928 519 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 BRDTQ58F21 947 aaPredicted RBP12.16□□□□□ -0.46
USE1-204ENST00000594399 ABHD15Q6UXT9 468 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 AFG1LQ8WV93 481 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 SEPT1Q8WYJ6 367 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 ATP6V0A1Q93050 837 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 DYDC2Q96IM9 177 aa12.16□□□□□ -0.46
USE1-204ENST00000594399 PYM1Q9BRP8 204 aaKnown RBP12.16□□□□□ -0.46
USE1-204ENST00000594399 LXNQ9BS40 222 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms