RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 TNPO3Q9Y5L0 923 aaKnown RBP6.97□□□□□ -1.29
SMAD4-208ENST00000589706 DOT1LQ8TEK3 1739 aa6.96□□□□□ -1.29
SMAD4-208ENST00000589706 CCDC66A2RUB6 948 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 WFS1O76024 890 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 EYA4O95677 639 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 EOMESO95936 686 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 SCG5P05408 212 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 MCM5P33992 734 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 ECI1P42126 302 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 NEK4P51957 841 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 CCDC173Q0VFZ6 552 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 ZNF460Q14592 562 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 PCBP1Q15365 356 aaKnown RBP eCLIP6.96□□□□□ -1.3
SMAD4-208ENST00000589706 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.96□□□□□ -1.3
SMAD4-208ENST00000589706 MAMDC2Q7Z304 686 aaPredicted RBP6.96□□□□□ -1.3
SMAD4-208ENST00000589706 FMNL3Q8IVF7 1028 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 TOP6BLQ8N6T0 577 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 DCAF5Q96JK2 942 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 COX4I2Q96KJ9 171 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 MAGEB10Q96LZ2 347 aaPredicted RBP6.96□□□□□ -1.3
SMAD4-208ENST00000589706 MPHOSPH9Q99550 1183 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 PIM2Q9P1W9 311 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 FAN1Q9Y2M0 1017 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 GPR55Q9Y2T6 319 aaPredicted RBP6.96□□□□□ -1.3
SMAD4-208ENST00000589706 TAF1LQ8IZX4 1826 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 SBF1O95248 1867 aa6.96□□□□□ -1.3
SMAD4-208ENST00000589706 ARFGEF1Q9Y6D6 1849 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 ZNF500O60304 480 aaPredicted RBP6.95□□□□□ -1.3
SMAD4-208ENST00000589706 SPATA31C1P0DKV0 1188 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 ITIH2P19823 946 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 IGFALSP35858 605 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 GUCY2FP51841 1108 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 SETQ01105 290 aaPredicted RBP6.95□□□□□ -1.3
SMAD4-208ENST00000589706 NRG1Q02297 640 aaPredicted RBP6.95□□□□□ -1.3
SMAD4-208ENST00000589706 CDK5R2Q13319 367 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 UVSSAQ2YD98 709 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 SLC35F1Q5T1Q4 408 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 GPAT2Q6NUI2 795 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 TMC3Q7Z5M5 1100 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 C1orf159Q96HA4 380 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 PPP1R9BQ96SB3 815 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 GRPEL1Q9HAV7 217 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 KCNH3Q9ULD8 1083 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 BRCA1P38398 1863 aaKnown RBP6.95□□□□□ -1.3
SMAD4-208ENST00000589706 PDE4DIPQ5VU43 2346 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 C4BP0C0L5 1744 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 TOGARAM1Q9Y4F4 1720 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 CNTNAP4Q9C0A0 1308 aa6.95□□□□□ -1.3
SMAD4-208ENST00000589706 VIRMAQ69YN4 1812 aaKnown RBP6.94□□□□□ -1.3
SMAD4-208ENST00000589706 UBR3Q6ZT12 1888 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 VGLL3A8MV65 326 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 C9orf172C9J069 976 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 SIGLEC6O43699 453 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 BMP3P12645 472 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 MSNP26038 577 aaKnown RBP6.94□□□□□ -1.3
SMAD4-208ENST00000589706 MAP4P27816 1152 aaKnown RBP6.94□□□□□ -1.3
SMAD4-208ENST00000589706 NOS3P29474 1203 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 FLT3P36888 993 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 IREB2P48200 963 aaKnown RBP6.94□□□□□ -1.3
SMAD4-208ENST00000589706 MAP2K1Q02750 393 aaPredicted RBP6.94□□□□□ -1.3
SMAD4-208ENST00000589706 CYP4F3Q08477 520 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 STRN3Q13033 797 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 PRSS53Q2L4Q9 553 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 DPY19L1Q2PZI1 675 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 CC2D1BQ5T0F9 858 aaKnown RBP6.94□□□□□ -1.3
SMAD4-208ENST00000589706 PKN3Q6P5Z2 889 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 USP53Q70EK8 1073 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 CREBRFQ8IUR6 639 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 WFDC12Q8WWY7 111 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 NACC1Q96RE7 527 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 PLCD4Q9BRC7 762 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 DUSP23Q9BVJ7 150 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 ASCC2Q9H1I8 757 aaPredicted RBP6.94□□□□□ -1.3
SMAD4-208ENST00000589706 C1GALT1Q9NS00 363 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 CHST7Q9NS84 486 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 TRAF6Q9Y4K3 522 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 NFAT5O94916 1531 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 TTC21BQ7Z4L5 1316 aa6.94□□□□□ -1.3
SMAD4-208ENST00000589706 NSD3Q9BZ95 1437 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 FAM95CA0A1B0GW59 222 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 TCRBV16S1A1N1A0A5B0 115 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 B4E1Z4 1266 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 H0Y8X5 98 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 RBAK-RBAKDNI3L0D1 243 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 KPNA6O60684 536 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 ALDH1L1O75891 902 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 RASGRP1O95267 797 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 PRAMEF1O95521 474 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 JMJD7P0C870 316 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 POU4F1Q01851 419 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 DHCR24Q15392 516 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 CFAP100Q494V2 611 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 SFRP5Q5T4F7 317 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 SASS6Q6UVJ0 657 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 UBE2R2Q712K3 238 aaPredicted RBP6.93□□□□□ -1.3
SMAD4-208ENST00000589706 DTWD2Q8NBA8 298 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 KREMEN2Q8NCW0 462 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 GIMAP7Q8NHV1 300 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 WDR66Q8TBY9 1149 aa6.93□□□□□ -1.3
SMAD4-208ENST00000589706 DCAF4Q8WV16 495 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms