RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 GPRASP2Q96D09 838 aa16.12■□□□□ 0.17
VMP1-209ENST00000588915 GRXCR2A6NFK2 248 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 NCK2O43639 380 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 RPLP2P05387 115 aaKnown RBP16.11■□□□□ 0.17
VMP1-209ENST00000588915 RB1P06400 928 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 CTSHP09668 335 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 COL19A1Q14993 1142 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 USP17L6PQ6QN14 398 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 MB21D2Q8IYB1 491 aaPredicted RBP16.11■□□□□ 0.17
VMP1-209ENST00000588915 GJD3Q8N144 294 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 BANK1Q8NDB2 785 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 LMBR1Q8WVP7 490 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 PABPC5Q96DU9 382 aaKnown RBP16.11■□□□□ 0.17
VMP1-209ENST00000588915 IFIH1Q9BYX4 1025 aaKnown RBP16.11■□□□□ 0.17
VMP1-209ENST00000588915 LMAN2LQ9H0V9 348 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 CD320Q9NPF0 282 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 SEC63Q9UGP8 760 aaKnown RBP16.11■□□□□ 0.17
VMP1-209ENST00000588915 FAM50BQ9Y247 325 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 RWDD3Q9Y3V2 267 aa16.11■□□□□ 0.17
VMP1-209ENST00000588915 C5orf67F2Z3F1 127 aa16.1■□□□□ 0.17
VMP1-209ENST00000588915 UPP2O95045 317 aa16.1■□□□□ 0.17
VMP1-209ENST00000588915 ANTXR2P58335 489 aa16.1■□□□□ 0.17
VMP1-209ENST00000588915 ARHGAP4P98171 946 aa16.1■□□□□ 0.17
VMP1-209ENST00000588915 UTP14CQ5TAP6 766 aaKnown RBP16.1■□□□□ 0.17
VMP1-209ENST00000588915 PTCRAQ6ISU1 281 aaPredicted RBP16.1■□□□□ 0.17
VMP1-209ENST00000588915 RSPH3Q86UC2 560 aa16.1■□□□□ 0.17
VMP1-209ENST00000588915 ZNF654Q8IZM8 581 aa16.1■□□□□ 0.17
VMP1-209ENST00000588915 SEPT1Q8WYJ6 367 aa16.1■□□□□ 0.17
VMP1-209ENST00000588915 KHSRPQ92945 711 aaKnown RBP eCLIP16.1■□□□□ 0.17
VMP1-209ENST00000588915 IL17RAQ96F46 866 aa16.1■□□□□ 0.17
VMP1-209ENST00000588915 OSBPL7Q9BZF2 842 aa16.1■□□□□ 0.17
VMP1-209ENST00000588915 EHMT1Q9H9B1 1298 aa16.1■□□□□ 0.17
VMP1-209ENST00000588915 CHRNA1P02708 482 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 ALADP13716 330 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 CASC1Q6TDU7 716 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 FAM43BQ6ZT52 329 aaPredicted RBP16.09■□□□□ 0.17
VMP1-209ENST00000588915 TRIM50Q86XT4 487 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 TEX2Q8IWB9 1127 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 FIBCD1Q8N539 461 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 NSUN3Q9H649 340 aaKnown RBP16.09■□□□□ 0.17
VMP1-209ENST00000588915 LY9Q9HBG7 655 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 C11orf16Q9NQ32 467 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 ERAP1Q9NZ08 941 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 PRKAG3Q9UGI9 489 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 TAF6LQ9Y6J9 622 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 SQORQ9Y6N5 450 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 KAT6AQ92794 2004 aa16.09■□□□□ 0.17
VMP1-209ENST00000588915 PRR33A8MZF0 331 aa16.08■□□□□ 0.16
VMP1-209ENST00000588915 CALM1P0DP23 149 aa16.08■□□□□ 0.16
VMP1-209ENST00000588915 CALM2P0DP24 149 aa16.08■□□□□ 0.16
VMP1-209ENST00000588915 CALM3P0DP25 149 aa16.08■□□□□ 0.16
VMP1-209ENST00000588915 KCNA2P16389 499 aa16.08■□□□□ 0.16
VMP1-209ENST00000588915 HOXD11P31277 338 aaPredicted RBP16.08■□□□□ 0.16
VMP1-209ENST00000588915 TCF7P36402 384 aaPredicted RBP16.08■□□□□ 0.16
VMP1-209ENST00000588915 TNPO1Q92973 898 aaKnown RBP16.08■□□□□ 0.16
VMP1-209ENST00000588915 TMEM87BQ96K49 555 aa16.08■□□□□ 0.16
VMP1-209ENST00000588915 SMARCAD1Q9H4L7 1026 aa16.08■□□□□ 0.16
VMP1-209ENST00000588915 PSTPIP2Q9H939 334 aa16.08■□□□□ 0.16
VMP1-209ENST00000588915 MBLAC1A4D2B0 266 aaPredicted RBP16.07■□□□□ 0.16
VMP1-209ENST00000588915 RRN3P2A6NIE6 340 aa16.07■□□□□ 0.16
VMP1-209ENST00000588915 ATP9AO75110 1047 aa16.07■□□□□ 0.16
VMP1-209ENST00000588915 IL9P15248 144 aa16.07■□□□□ 0.16
VMP1-209ENST00000588915 BMPR1AP36894 532 aa16.07■□□□□ 0.16
VMP1-209ENST00000588915 LIFRP42702 1097 aa16.07■□□□□ 0.16
VMP1-209ENST00000588915 MGAT3Q09327 533 aa16.07■□□□□ 0.16
VMP1-209ENST00000588915 PPFIA1Q13136 1202 aa16.07■□□□□ 0.16
VMP1-209ENST00000588915 PIBF1Q8WXW3 757 aa16.07■□□□□ 0.16
VMP1-209ENST00000588915 CLP1Q92989 425 aaKnown RBP16.07■□□□□ 0.16
VMP1-209ENST00000588915 C11orf84Q9BUA3 381 aaPredicted RBP16.07■□□□□ 0.16
VMP1-209ENST00000588915 UBIAD1Q9Y5Z9 338 aa16.07■□□□□ 0.16
VMP1-209ENST00000588915 GSTTP1A0A1W2PQM5 241 aa16.06■□□□□ 0.16
VMP1-209ENST00000588915 CCDC69A6NI79 296 aa16.06■□□□□ 0.16
VMP1-209ENST00000588915 ENPP3O14638 875 aa16.06■□□□□ 0.16
VMP1-209ENST00000588915 MCM5P33992 734 aa16.06■□□□□ 0.16
VMP1-209ENST00000588915 SP4Q02446 784 aa16.06■□□□□ 0.16
VMP1-209ENST00000588915 LPIN1Q14693 890 aa16.06■□□□□ 0.16
VMP1-209ENST00000588915 GRIK4Q16099 956 aa16.06■□□□□ 0.16
VMP1-209ENST00000588915 TCEAL5Q5H9L2 206 aa16.06■□□□□ 0.16
VMP1-209ENST00000588915 SRBD1Q8N5C6 995 aaKnown RBP16.06■□□□□ 0.16
VMP1-209ENST00000588915 ZNF689Q96CS4 500 aaPredicted RBP16.06■□□□□ 0.16
VMP1-209ENST00000588915 PLVAPQ9BX97 442 aa16.06■□□□□ 0.16
VMP1-209ENST00000588915 RC3H2Q9HBD1 1191 aaKnown RBP16.06■□□□□ 0.16
VMP1-209ENST00000588915 TUBE1Q9UJT0 475 aa16.06■□□□□ 0.16
VMP1-209ENST00000588915 TELO2Q9Y4R8 837 aa16.06■□□□□ 0.16
VMP1-209ENST00000588915 RBM8AQ9Y5S9 174 aaKnown RBP16.06■□□□□ 0.16
VMP1-209ENST00000588915 RALGAPA2Q2PPJ7 1873 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 SPDYE3A6NKU9 549 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 PRC1O43663 620 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 LINC00271P0C7V0 271 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 GHRP10912 638 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 ITGB5P18084 799 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 SSTR3P32745 418 aaPredicted RBP16.05■□□□□ 0.16
VMP1-209ENST00000588915 MTMR1Q13613 665 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 CTC1Q2NKJ3 1217 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 FBXO47Q5MNV8 452 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 NFXL1Q6ZNB6 911 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 GLG1Q92896 1179 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 FTHL17Q9BXU8 183 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 JADE2Q9NQC1 790 aa16.05■□□□□ 0.16
VMP1-209ENST00000588915 DOCK5Q9H7D0 1870 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms