RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 WWC2Q6AWC2 1192 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 GLB1LQ6UWU2 654 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 FRMD5Q7Z6J6 570 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 TRIM48Q8IWZ4 208 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 ALG3Q92685 438 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 PPP1R14AQ96A00 147 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 TCTN2Q96GX1 697 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 ABHD8Q96I13 439 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 SRRTQ9BXP5 876 aaKnown RBP2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 ENPP3O14638 875 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 ECEL1O95672 775 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 ZGLP1P0C6A0 271 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 EEF1DP3Q658K8 133 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 PPP4R4Q6NUP7 873 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 KISS1RQ969F8 398 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 DUSP15Q9H1R2 295 aaPredicted RBP2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 PDLIM7Q9NR12 457 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 ST7Q9NRC1 585 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 KBTBD4Q9NVX7 518 aa2.48□□□□□ -2.01
SMCHD1-211ENST00000584897 NCANO14594 1321 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 LAMB4A4D0S4 1761 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 SLIT3O75094 1523 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 PPFIA2O75334 1257 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 FBXO24O75426 580 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 INHBBP09529 407 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 PAMP19021 973 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 AMPD2Q01433 879 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 TNNI3KQ59H18 835 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 CCDC181Q5TID7 509 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 HOMER1Q86YM7 354 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 TTC9BQ8N6N2 239 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 APPBP2Q92624 585 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 SEC16BQ96JE7 1060 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 CNNM2Q9H8M5 875 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 NTMQ9P121 344 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 G3BP2Q9UN86 482 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 SUGT1Q9Y2Z0 365 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 MRPL42Q9Y6G3 142 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 KIF24Q5T7B8 1368 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 ADAMTS4O75173 837 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 HSD3B2P26439 372 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 PMS1P54277 932 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 EIF6P56537 245 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 GRB10Q13322 594 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 FAM50AQ14320 339 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 SYNPOQ8N3V7 929 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 STK35Q8TDR2 534 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 GAL3ST3Q96A11 431 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 ACSF2Q96CM8 615 aaPredicted RBP2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 MYH16Q9H6N6 1097 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 EHMT1Q9H9B1 1298 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 CD320Q9NPF0 282 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 ACSL6Q9UKU0 697 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 NOP58Q9Y2X3 529 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 COL4A3BPQ9Y5P4 624 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 FHOD1Q9Y613 1164 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 NPHP3Q7Z494 1330 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 ROCK2O75116 1388 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 PIK3C2GO75747 1445 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 ZNF503-AS2A6NEH8 195 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 PLIN1O60240 522 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 GSTM1P09488 218 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 ATF4P18848 351 aaPredicted RBP2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 TFE3P19532 575 aaPredicted RBP2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 L1CAMP32004 1257 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 TEKQ02763 1124 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 SEZ6Q53EL9 994 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 ADAT2Q7Z6V5 191 aaKnown RBP2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 LZTR1Q8N653 840 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 STAG1Q8WVM7 1258 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 ZNF700Q9H0M5 742 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 WHRNQ9P202 907 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 PCDHB14Q9Y5E9 798 aa2.47□□□□□ -2.01
SMCHD1-211ENST00000584897 GPRASP1Q5JY77 1395 aa2.46□□□□□ -2.01
SMCHD1-211ENST00000584897 ADAMTSL1Q8N6G6 1762 aa2.46□□□□□ -2.01
SMCHD1-211ENST00000584897 CPP00450 1065 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 CPEP16870 476 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 SARSP49591 514 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 CTCFP49711 727 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 RASA3Q14644 834 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 MTERF2Q49AM1 385 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 ZFYVE27Q5T4F4 411 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 DPP8Q6V1X1 898 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 NLRX1Q86UT6 975 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 C19orf47Q8N9M1 422 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 DEPDC7Q96QD5 511 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 KRTAP4-12Q9BQ66 201 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 KRTAP9-2Q9BYQ4 174 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 FOXP3Q9BZS1 431 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 LRP2BPQ9P2M1 347 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 TCAF1Q9Y4C2 921 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 SPATA31A3Q5VYP0 1347 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 KTN1Q86UP2 1357 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 SPATA31E1Q6ZUB1 1445 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 DNAJC25-GNG10A0A024R161 153 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 TNFRSF10CO14798 259 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 SRGAP3O43295 1099 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 RAB11FIP3O75154 756 aa2.46□□□□□ -2.02
SMCHD1-211ENST00000584897 PRRT2Q7Z6L0 340 aaPredicted RBP2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms