RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CAVIN2O95810 425 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 SPATA31C1P0DKV0 1188 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 PLCG1P19174 1290 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 POSTNQ15063 836 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 NAALADL2Q58DX5 795 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 NT5DC1Q5TFE4 455 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 IQSEC1Q6DN90 963 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 CCDC62Q6P9F0 684 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 SEPT14Q6ZU15 432 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 CATSPER3Q86XQ3 398 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 GJA10Q969M2 543 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 PAGE5Q96GU1 130 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 ZFP91Q96JP5 570 aaPredicted RBP17.11■□□□□ 0.33
SS18-215ENST00000580642 PNMA5Q96PV4 448 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 ZSWIM4Q9H7M6 989 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 KIAA1468Q9P260 1216 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 DNM3Q9UQ16 869 aa17.11■□□□□ 0.33
SS18-215ENST00000580642 EML1O00423 815 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 TRPA1O75762 1119 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 SLITRK3O94933 977 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 ATG7O95352 703 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 PSAPP07602 524 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 UBA1P22314 1058 aaKnown RBP17.1■□□□□ 0.33
SS18-215ENST00000580642 QARSP47897 775 aaKnown RBP17.1■□□□□ 0.33
SS18-215ENST00000580642 PRMT2P55345 433 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 MIS18BP1Q6P0N0 1132 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 SV2BQ7L1I2 683 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 TRIML1Q8N9V2 468 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 NPLOC4Q8TAT6 608 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 SPATA20Q8TB22 786 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 RAD54LQ92698 747 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 EMID1Q96A84 441 aaPredicted RBP17.1■□□□□ 0.33
SS18-215ENST00000580642 NACC1Q96RE7 527 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 PANK2Q9BZ23 570 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 KATNBL1Q9H079 304 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 TUBE1Q9UJT0 475 aa17.1■□□□□ 0.33
SS18-215ENST00000580642 GTPBP6O43824 516 aaPredicted RBP17.09■□□□□ 0.33
SS18-215ENST00000580642 MED24O75448 989 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 TBC1D8O95759 1140 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 SNAI1O95863 264 aaPredicted RBP17.09■□□□□ 0.33
SS18-215ENST00000580642 CCDC192P0DO97 292 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 C1QTNF8P60827 252 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 PSMC5P62195 406 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 ACVR2BQ13705 512 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 LAMC2Q13753 1193 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 CAMK4Q16566 473 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 CELF3Q5SZQ8 465 aaKnown RBP17.09■□□□□ 0.33
SS18-215ENST00000580642 TAPT1Q6NXT6 567 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 SASS6Q6UVJ0 657 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 C4orf19Q8IY42 314 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 LARP4BQ92615 738 aaKnown RBP17.09■□□□□ 0.33
SS18-215ENST00000580642 ATP6V0A1Q93050 837 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 ERO1AQ96HE7 468 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 TRIM47Q96LD4 638 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 GSDMAQ96QA5 445 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 BMP2KQ9NSY1 1161 aaPredicted RBP17.09■□□□□ 0.33
SS18-215ENST00000580642 BLOC1S4Q9NUP1 217 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 KCND2Q9NZV8 630 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 KIAA1024Q9UPX6 916 aa17.09■□□□□ 0.33
SS18-215ENST00000580642 ZNFX1Q9P2E3 1918 aaKnown RBP17.09■□□□□ 0.33
SS18-215ENST00000580642 LRRC37A2A6NM11 1700 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 GPR25O00155 361 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 CHMP2AO43633 222 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 FARP2O94887 1054 aaPredicted RBP17.08■□□□□ 0.32
SS18-215ENST00000580642 CCNE2O96020 404 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 ACTR2P61160 394 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 SP2Q02086 613 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 ZRSR1Q15695 479 aaKnown RBP17.08■□□□□ 0.32
SS18-215ENST00000580642 LRSAM1Q6UWE0 723 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 ABHD15Q6UXT9 468 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 FBXO16Q8IX29 292 aaPredicted RBP17.08■□□□□ 0.32
SS18-215ENST00000580642 SEPT1Q8WYJ6 367 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 C7orf25Q9BPX7 421 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 BEGAINQ9BUH8 593 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 GZF1Q9H116 711 aaPredicted RBP17.08■□□□□ 0.32
SS18-215ENST00000580642 MLXIPQ9HAP2 919 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 RMND1Q9NWS8 449 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 SAMM50Q9Y512 469 aa17.08■□□□□ 0.32
SS18-215ENST00000580642 IGKV6D-21A0A0A0MT36 114 aa17.07■□□□□ 0.32
SS18-215ENST00000580642 POTEB3A0JP26 581 aa17.07■□□□□ 0.32
SS18-215ENST00000580642 SYCE3A1L190 88 aa17.07■□□□□ 0.32
SS18-215ENST00000580642 EYA4O95677 639 aa17.07■□□□□ 0.32
SS18-215ENST00000580642 TXNP10599 105 aaKnown RBP17.07■□□□□ 0.32
SS18-215ENST00000580642 SARSP49591 514 aaKnown RBP17.07■□□□□ 0.32
SS18-215ENST00000580642 SLC26A2P50443 739 aa17.07■□□□□ 0.32
SS18-215ENST00000580642 DPYDQ12882 1025 aa17.07■□□□□ 0.32
SS18-215ENST00000580642 DUSP28Q4G0W2 176 aa17.07■□□□□ 0.32
SS18-215ENST00000580642 CT47A1Q5JQC4 288 aaPredicted RBP17.07■□□□□ 0.32
SS18-215ENST00000580642 POTEBQ6S5H4 581 aa17.07■□□□□ 0.32
SS18-215ENST00000580642 DHX37Q8IY37 1157 aaKnown RBP17.07■□□□□ 0.32
SS18-215ENST00000580642 SYT2Q8N9I0 419 aaPredicted RBP17.07■□□□□ 0.32
SS18-215ENST00000580642 SMARCE1Q969G3 411 aa17.07■□□□□ 0.32
SS18-215ENST00000580642 CCDC47Q96A33 483 aaKnown RBP17.07■□□□□ 0.32
SS18-215ENST00000580642 DYDC2Q96IM9 177 aa17.07■□□□□ 0.32
SS18-215ENST00000580642 PKD2L1Q9P0L9 805 aa17.07■□□□□ 0.32
SS18-215ENST00000580642 DBR1Q9UK59 544 aaKnown RBP17.07■□□□□ 0.32
SS18-215ENST00000580642 Q9Y3F1 56 aa17.07■□□□□ 0.32
SS18-215ENST00000580642 PVALEFA0A1B0GWK0 134 aa17.06■□□□□ 0.32
SS18-215ENST00000580642 DDX39AO00148 427 aaKnown RBP17.06■□□□□ 0.32
SS18-215ENST00000580642 FKTNO75072 461 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms