RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-217	ENST00000574022	STK11IP	Q8N1F8	1099 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	CAMKK1	Q8N5S9	505 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	TOP6BL	Q8N6T0	577 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	FAM156A	Q8NDB6	213 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	GIMAP7	Q8NHV1	300 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	DIS3L	Q8TF46	1054 aa	Known RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	FBLIM1	Q8WUP2	373 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	POF1B	Q8WVV4	589 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	SSH1	Q8WYL5	1049 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	PGBD4	Q96DM1	585 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	C1GALT1C1	Q96EU7	318 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	TRMT2B	Q96GJ1	504 aa	Known RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	TCTN2	Q96GX1	697 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	ACAP3	Q96P50	834 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	ORAI2	Q96SN7	254 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	TBCB	Q99426	244 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	JAM3	Q9BX67	310 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	HDAC8	Q9BY41	377 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	GTPBP4	Q9BZE4	634 aa	Known RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	MS4A5	Q9H3V2	200 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	SMURF1	Q9HCE7	757 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	PRDM5	Q9NQX1	630 aa	Predicted RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	ACSS2	Q9NR19	701 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	TRMT13	Q9NUP7	481 aa	Known RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	CLDND1	Q9NY35	253 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	PPARGC1A	Q9UBK2	798 aa	Known RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	ZNF69	Q9UC07	566 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	PCDHGB6	Q9Y5F9	930 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	GPR45	Q9Y5Y3	372 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	LCHN	A4D1U4	455 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	WTIP	A6NIX2	430 aa	Predicted RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	SHISA8	B8ZZ34	492 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	ZNF561-AS1	K7EIQ3	104 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	DVL2	O14641	736 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	KCNK3	O14649	394 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	MAFG	O15525	162 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	DYNC1LI2	O43237	492 aa	Predicted RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	OIP5	O43482	229 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	NDUFS2	O75306	463 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	TUSC2	O75896	110 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	ADAMTS2	O95450	1211 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	TBC1D8	O95759	1140 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	AMY2A	P04746	511 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	SYP	P08247	313 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	BCR	P11274	1271 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	GNAT1	P11488	350 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	COL6A2	P12110	1019 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	AMY2B	P19961	511 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	PDC	P20941	246 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	AGXT	P21549	392 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	C5AR1	P21730	350 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	PTX3	P26022	381 aa	Predicted RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	BCL6	P41182	706 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	PREP	P48147	710 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	GTF2A2	P52657	109 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	SRSF2	Q01130	221 aa	Known RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	KIF23	Q02241	960 aa	Predicted RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	BTK	Q06187	659 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	SPIRE1	Q08AE8	756 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	TRIM28	Q13263	835 aa	Known RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	CDK5R2	Q13319	367 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	IFIT5	Q13325	482 aa	Known RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	SEMA5A	Q13591	1074 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	TRIM14	Q14142	442 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	PDCD2	Q16342	344 aa	Predicted RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	UGT8	Q16880	541 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	SLC4A8	Q2Y0W8	1093 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	UAP1L1	Q3KQV9	507 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	MBLAC2	Q68D91	279 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	DARS2	Q6PI48	645 aa	Known RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	HHIPL2	Q6UWX4	724 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	MMS22L	Q6ZRQ5	1243 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	CEP68	Q76N32	757 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	OVCH2	Q7RTZ1	564 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	PTRH1	Q86Y79	214 aa	Known RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	CPNE8	Q86YQ8	564 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	ZZZ3	Q8IYH5	903 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	AGGF1	Q8N302	714 aa	eCLIP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	TMEM130	Q8N3G9	435 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	USHBP1	Q8N6Y0	703 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	PPM1N	Q8N819	430 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	PPP1R35	Q8TAP8	253 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	PIWIL2	Q8TC59	973 aa	Known RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	ATXN2L	Q8WWM7	1075 aa	Known RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	TRIM63	Q969Q1	353 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	MVB12A	Q96EY5	273 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	SGCZ	Q96LD1	299 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	PTCHD1	Q96NR3	888 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	SLC2A13	Q96QE2	648 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	CDC5L	Q99459	802 aa	Known RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	PAGR1	Q9BTK6	254 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	DUSP23	Q9BVJ7	150 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	CEP41	Q9BYV8	373 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	QRSL1	Q9H0R6	528 aa	Known RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	TMEM60	Q9H2L4	133 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	CDIP1	Q9H305	208 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	ZMAT4	Q9H898	229 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	AS3MT	Q9HBK9	375 aa		2.57	□□□□□ -2
CHD3-217	ENST00000574022	ZNF277	Q9NRM2	450 aa	Predicted RBP	2.57	□□□□□ -2
CHD3-217	ENST00000574022	C9orf78	Q9NZ63	289 aa	Predicted RBP	2.57	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms