RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 BAP1Q92560 729 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 PSTPIP2Q9H939 334 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 RIC8AQ9NPQ8 531 aa15.87■□□□□ 0.13
VPS35-210ENST00000568784 GFPT2O94808 682 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 GCNT3O95395 438 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 GUCY2CP25092 1073 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 KCNMA1Q12791 1236 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 SF3B3Q15393 1217 aaKnown RBP15.86■□□□□ 0.13
VPS35-210ENST00000568784 EXOC3L4Q17RC7 722 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 FAM98CQ17RN3 349 aaKnown RBP15.86■□□□□ 0.13
VPS35-210ENST00000568784 LRRC45Q96CN5 670 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 FBXL5Q9UKA1 691 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 HDAC9Q9UKV0 1011 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 RTCBQ9Y3I0 505 aaKnown RBP15.86■□□□□ 0.13
VPS35-210ENST00000568784 MEFVO15553 781 aaPredicted RBP15.86■□□□□ 0.13
VPS35-210ENST00000568784 MRPL12P52815 198 aaKnown RBP15.86■□□□□ 0.13
VPS35-210ENST00000568784 FIGNQ5HY92 759 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 GJB7Q6PEY0 223 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 IQCDQ96DY2 449 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 NYXQ9GZU5 481 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 TRPM3Q9HCF6 1732 aaPredicted RBP15.86■□□□□ 0.13
VPS35-210ENST00000568784 SART1O43290 800 aaKnown RBP15.86■□□□□ 0.13
VPS35-210ENST00000568784 TBCAO75347 108 aaKnown RBP15.86■□□□□ 0.13
VPS35-210ENST00000568784 PTK2Q05397 1052 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 SLC18A3Q16572 532 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 KSR1Q8IVT5 923 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 PURBQ96QR8 312 aaKnown RBP15.86■□□□□ 0.13
VPS35-210ENST00000568784 CD248Q9HCU0 757 aa15.86■□□□□ 0.13
VPS35-210ENST00000568784 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.86■□□□□ 0.13
VPS35-210ENST00000568784 FAM196BA6NMK8 535 aa15.85■□□□□ 0.13
VPS35-210ENST00000568784 XRCC5P13010 732 aaKnown RBP15.85■□□□□ 0.13
VPS35-210ENST00000568784 IFNAR2P48551 515 aa15.85■□□□□ 0.13
VPS35-210ENST00000568784 ZNF211Q13398 564 aaPredicted RBP15.85■□□□□ 0.13
VPS35-210ENST00000568784 MAEAQ7L5Y9 396 aa15.85■□□□□ 0.13
VPS35-210ENST00000568784 ADAMTS7Q9UKP4 1686 aa15.85■□□□□ 0.13
VPS35-210ENST00000568784 FGRP09769 529 aa15.85■□□□□ 0.13
VPS35-210ENST00000568784 RFC4P35249 363 aa15.85■□□□□ 0.13
VPS35-210ENST00000568784 SCNN1DP51172 638 aa15.85■□□□□ 0.13
VPS35-210ENST00000568784 IFI16Q16666 785 aaKnown RBP15.85■□□□□ 0.13
VPS35-210ENST00000568784 RNF10Q8N5U6 811 aaKnown RBP15.85■□□□□ 0.13
VPS35-210ENST00000568784 DYDC1Q8WWB3 177 aa15.85■□□□□ 0.13
VPS35-210ENST00000568784 TLR2O60603 784 aa15.85■□□□□ 0.13
VPS35-210ENST00000568784 MDH1P40925 334 aaKnown RBP15.85■□□□□ 0.13
VPS35-210ENST00000568784 SLCO1A2P46721 670 aa15.85■□□□□ 0.13
VPS35-210ENST00000568784 MAGOHP61326 146 aaKnown RBP15.85■□□□□ 0.13
VPS35-210ENST00000568784 GTF2IP78347 998 aa15.85■□□□□ 0.13
VPS35-210ENST00000568784 MAGOHBQ96A72 148 aaKnown RBP15.85■□□□□ 0.13
VPS35-210ENST00000568784 LMTK3Q96Q04 1460 aa15.85■□□□□ 0.13
VPS35-210ENST00000568784 FRMD3A2A2Y4 597 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 FLOT1O75955 427 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 H2AFZP0C0S5 128 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 TCP10Q12799 353 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 H2AFVQ71UI9 128 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 CUL5Q93034 780 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 EPN3Q9H201 632 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 TAF1DQ9H5J8 278 aaPredicted RBP15.84■□□□□ 0.13
VPS35-210ENST00000568784 GRIN2DO15399 1336 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 PGRMC1O00264 195 aaKnown RBP15.84■□□□□ 0.13
VPS35-210ENST00000568784 TTI1O43156 1089 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 BUB1BO60566 1050 aaPredicted RBP15.84■□□□□ 0.13
VPS35-210ENST00000568784 ITGA4P13612 1032 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 CDK17Q00537 523 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 ECM1Q16610 540 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 LRRC55Q6ZSA7 311 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 LINC00116Q8NCU8 138 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 WHAMMQ8TF30 809 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 TRIM51Q9BSJ1 452 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 SPZ1Q9BXG8 430 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 NUCKS1Q9H1E3 243 aaKnown RBP15.84■□□□□ 0.13
VPS35-210ENST00000568784 LAMB4A4D0S4 1761 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 SSU72P8A0A1W2PR75 194 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 USP17L10C9JJH3 530 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 NAB2Q15742 525 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 GLE1Q53GS7 698 aaKnown RBP15.84■□□□□ 0.13
VPS35-210ENST00000568784 SLC30A10Q6XR72 485 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 MYCBPAPQ8TBZ2 947 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 MDM1Q8TC05 714 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 UTP11Q9Y3A2 253 aaKnown RBP15.84■□□□□ 0.13
VPS35-210ENST00000568784 NOC2LQ9Y3T9 749 aaKnown RBP15.84■□□□□ 0.13
VPS35-210ENST00000568784 GRID2IPA4D2P6 1211 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 PHF20L1A8MW92 1017 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 ERVK-9P63128 1117 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 PTGISQ16647 500 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 USP38Q8NB14 1042 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 MGARPQ8TDB4 240 aa15.84■□□□□ 0.13
VPS35-210ENST00000568784 LRRN2O75325 713 aa15.83■□□□□ 0.13
VPS35-210ENST00000568784 FGGP02679 453 aa15.83■□□□□ 0.13
VPS35-210ENST00000568784 VIMP08670 466 aaKnown RBP15.83■□□□□ 0.13
VPS35-210ENST00000568784 AKR1B1P15121 316 aa15.83■□□□□ 0.13
VPS35-210ENST00000568784 HSD17B3P37058 310 aa15.83■□□□□ 0.13
VPS35-210ENST00000568784 PNMA8AQ86V59 439 aaPredicted RBP15.83■□□□□ 0.13
VPS35-210ENST00000568784 DAGLBQ8NCG7 672 aa15.83■□□□□ 0.13
VPS35-210ENST00000568784 ANKS1AQ92625 1134 aa15.83■□□□□ 0.13
VPS35-210ENST00000568784 MYCBPQ99417 103 aaPredicted RBP15.83■□□□□ 0.13
VPS35-210ENST00000568784 KIF4AO95239 1232 aa15.83■□□□□ 0.12
VPS35-210ENST00000568784 PLTPP55058 493 aa15.83■□□□□ 0.12
VPS35-210ENST00000568784 RUFY4Q6ZNE9 571 aa15.83■□□□□ 0.12
VPS35-210ENST00000568784 CCDC26Q8TAB7 109 aa15.83■□□□□ 0.12
VPS35-210ENST00000568784 CEP89Q96ST8 783 aa15.83■□□□□ 0.12
VPS35-210ENST00000568784 CHORDC1Q9UHD1 332 aaPredicted RBP15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms