RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 KRBA2Q6ZNG9 492 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 NOL8Q76FK4 1167 aaKnown RBP3.86□□□□□ -1.79
VPS35-208ENST00000568612 SIAH1Q8IUQ4 282 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 SMARCC2Q8TAQ2 1214 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 TBC1D22AQ8WUA7 517 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 SNRNP27Q8WVK2 155 aaKnown RBP3.86□□□□□ -1.79
VPS35-208ENST00000568612 SEC14L1Q92503 715 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 C1orf159Q96HA4 380 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 DEPDC7Q96QD5 511 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 RNF38Q9H0F5 515 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 ZCCHC4Q9H5U6 513 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 EPB41L4AQ9HCS5 686 aaPredicted RBP3.86□□□□□ -1.79
VPS35-208ENST00000568612 PALD1Q9ULE6 856 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 MSRB2Q9Y3D2 182 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 DDX49Q9Y6V7 483 aaKnown RBP3.86□□□□□ -1.79
VPS35-208ENST00000568612 PMF1-BGLAPU3KQ54 211 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 RNF123Q5XPI4 1314 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 KDM2BQ8NHM5 1336 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 KANK1Q14678 1352 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 CCDC144AA2RUR9 1427 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 H7BY64 318 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 TPD52L2O43399 206 aaKnown RBP3.85□□□□□ -1.79
VPS35-208ENST00000568612 ANP32CO43423 234 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 DIAPH1O60610 1272 aaKnown RBP3.85□□□□□ -1.79
VPS35-208ENST00000568612 DGKIO75912 1065 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 TPM3P06753 285 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 MSNP26038 577 aaKnown RBP3.85□□□□□ -1.79
VPS35-208ENST00000568612 TNNT3P45378 269 aaPredicted RBP3.85□□□□□ -1.79
VPS35-208ENST00000568612 CBX1P83916 185 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 CHRNA2Q15822 529 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 ATP2B3Q16720 1220 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 MAP9Q49MG5 647 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 STEAP3Q658P3 488 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 ZNF280DQ6N043 979 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 CD300LDQ6UXZ3 194 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 ETV3LQ6ZN32 361 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 AMIGO3Q86WK7 504 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 RIOX2Q8IUF8 465 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 CXorf38Q8TB03 319 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 ZCRB1Q8TBF4 217 aaKnown RBP3.85□□□□□ -1.79
VPS35-208ENST00000568612 DCAF4Q8WV16 495 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 SREK1Q8WXA9 508 aaKnown RBP3.85□□□□□ -1.79
VPS35-208ENST00000568612 OSBP2Q969R2 916 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 DACT3Q96B18 629 aaPredicted RBP3.85□□□□□ -1.79
VPS35-208ENST00000568612 ARMC5Q96C12 935 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 PPP1R9BQ96SB3 815 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 FEZ1Q99689 392 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 KCNJ15Q99712 375 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 NOL10Q9BSC4 688 aaKnown RBP3.85□□□□□ -1.79
VPS35-208ENST00000568612 JAM3Q9BX67 310 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 CCDC113Q9H0I3 377 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 RANBP17Q9H2T7 1088 aaKnown RBP3.85□□□□□ -1.79
VPS35-208ENST00000568612 EPB41L1Q9H4G0 881 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 CXorf56Q9H5V9 222 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 GRPEL1Q9HAV7 217 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 GPR27Q9NS67 375 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 SNTG2Q9NY99 539 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 PPARGC1AQ9UBK2 798 aaKnown RBP3.85□□□□□ -1.79
VPS35-208ENST00000568612 SYNPO2Q9UMS6 1093 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 SUFUQ9UMX1 484 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 X6R8D5 127 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 IL16Q14005 1332 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 SYNRGQ9UMZ2 1314 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 IRS2Q9Y4H2 1338 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 SMG6Q86US8 1419 aaKnown RBP3.85□□□□□ -1.79
VPS35-208ENST00000568612 KIAA1107Q9UPP5 1409 aa3.85□□□□□ -1.79
VPS35-208ENST00000568612 TRBV23-1A0A0A0MS06 115 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 HGSO14964 777 aaPredicted RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 PLA2G1BP04054 148 aaKnown RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 INHBBP09529 407 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 CYP2C8P10632 490 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 HSPA5P11021 654 aaKnown RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 FBLN1P23142 703 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 IGFBP6P24592 240 aaPredicted RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 ABCD1P33897 745 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 MCM5P33992 734 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 STAT5AP42229 794 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 SLC6A11P48066 632 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 GSCP56915 257 aaPredicted RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 CACNB2Q08289 660 aaPredicted RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 SMAD4Q13485 552 aaKnown RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 BECN1Q14457 450 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 TESK1Q15569 626 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 ZSCAN26Q16670 478 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 FBLN7Q53RD9 439 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 FAM209AQ5JX71 171 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 SOGA3Q5TF21 947 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 ZKSCAN2Q63HK3 967 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 GET4Q7L5D6 327 aaPredicted RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 APBB1IPQ7Z5R6 666 aaPredicted RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 CCDC91Q7Z6B0 441 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 B3GNT8Q7Z7M8 397 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 MTDHQ86UE4 582 aaKnown RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 STK32CQ86UX6 486 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 ZC3H18Q86VM9 953 aaKnown RBP3.84□□□□□ -1.79
VPS35-208ENST00000568612 ADGRG2Q8IZP9 1017 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 ACRBPQ8NEB7 543 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 MYRIPQ8NFW9 859 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 ATL2Q8NHH9 583 aa3.84□□□□□ -1.79
VPS35-208ENST00000568612 PNISRQ8TF01 805 aaKnown RBP3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms