RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	NR3C2	P08235	984 aa		13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	SP100	P23497	879 aa	Predicted RBP	13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	TIE1	P35590	1138 aa		13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	CELF3	Q5SZQ8	465 aa	Known RBP	13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	ADSSL1	Q8N142	457 aa		13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	TMEM105	Q8N8V8	129 aa		13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	SLC39A7	Q92504	469 aa		13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	ZFP91	Q96JP5	570 aa	Predicted RBP	13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	PLVAP	Q9BX97	442 aa		13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	TUT1	Q9H6E5	874 aa	Known RBP	13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	SETD4	Q9NVD3	440 aa		13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	MRPL42	Q9Y6G3	142 aa	Known RBP	13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	ZFHX4	Q86UP3	3567 aa		13.77	□□□□□ -0.21
CLK3-222	ENST00000568232	MED19	A0JLT2	244 aa	Predicted RBP	13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	ENPP3	O14638	875 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	PER2	O15055	1255 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	ORC4	O43929	436 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	KRT37	O76014	449 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	C7	P10643	843 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	GHR	P10912	638 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	ZMYM1	Q5SVZ6	1142 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	VPS53	Q5VIR6	699 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	ZBTB33	Q86T24	672 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	KLHL23	Q8NBE8	558 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	VN1R2	Q8NFZ6	395 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	POF1B	Q8WVV4	589 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	SUSD6	Q92537	303 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	PPP2R3C	Q969Q6	453 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	FAM212A	Q96EL1	285 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	PXMP2	Q9NR77	195 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	ANAPC4	Q9UJX5	808 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	FRYL	O94915	3013 aa		13.76	□□□□□ -0.21
CLK3-222	ENST00000568232	ABCB11	O95342	1321 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	KIAA1217	Q5T5P2	1943 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	TTLL13P	A6NNM8	815 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	PPFIA3	O75145	1194 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	CAND2	O75155	1236 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	DGKI	O75912	1065 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	CHRNA1	P02708	482 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	LGALS2	P05162	132 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	FGR	P09769	529 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	SNHG28	P0DPA3	235 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	MYCL	P12524	364 aa	Predicted RBP	13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	CDC37	Q16543	378 aa	Predicted RBP	13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	FAM26D	Q5JW98	314 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	P2RX5	Q93086	422 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	NKD2	Q969F2	451 aa	Predicted RBP	13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	TLE6	Q9H808	572 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	PCDHB13	Q9Y5F0	798 aa		13.75	□□□□□ -0.21
CLK3-222	ENST00000568232	ATF7	P17544	494 aa	Predicted RBP	13.74	□□□□□ -0.21
CLK3-222	ENST00000568232	UBA1	P22314	1058 aa	Known RBP	13.74	□□□□□ -0.21
CLK3-222	ENST00000568232	PAN2	Q504Q3	1202 aa	Known RBP	13.74	□□□□□ -0.21
CLK3-222	ENST00000568232	MCF2L2	Q86YR7	1114 aa		13.74	□□□□□ -0.21
CLK3-222	ENST00000568232	APOL5	Q9BWW9	433 aa		13.74	□□□□□ -0.21
CLK3-222	ENST00000568232	SMOC2	Q9H3U7	446 aa		13.74	□□□□□ -0.21
CLK3-222	ENST00000568232	EHMT1	Q9H9B1	1298 aa		13.74	□□□□□ -0.21
CLK3-222	ENST00000568232	MLXIP	Q9HAP2	919 aa		13.74	□□□□□ -0.21
CLK3-222	ENST00000568232	TCP11L1	Q9NUJ3	509 aa		13.74	□□□□□ -0.21
CLK3-222	ENST00000568232	RIF1	Q5UIP0	2472 aa	Known RBP	13.74	□□□□□ -0.21
CLK3-222	ENST00000568232	CFB	P00751	764 aa		13.73	□□□□□ -0.21
CLK3-222	ENST00000568232	HSPD1	P10809	573 aa	Known RBP	13.73	□□□□□ -0.21
CLK3-222	ENST00000568232	LPIN1	Q14693	890 aa		13.73	□□□□□ -0.21
CLK3-222	ENST00000568232	ADGRF4	Q8IZF3	695 aa		13.73	□□□□□ -0.21
CLK3-222	ENST00000568232	KREMEN2	Q8NCW0	462 aa		13.73	□□□□□ -0.21
CLK3-222	ENST00000568232	IL31RA	Q8NI17	732 aa		13.73	□□□□□ -0.21
CLK3-222	ENST00000568232	MICAL1	Q8TDZ2	1067 aa		13.73	□□□□□ -0.21
CLK3-222	ENST00000568232	PDCD2L	Q9BRP1	358 aa		13.73	□□□□□ -0.21
CLK3-222	ENST00000568232	TELO2	Q9Y4R8	837 aa		13.73	□□□□□ -0.21
CLK3-222	ENST00000568232	MYH7B	A7E2Y1	1941 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	ZNF292	O60281	2723 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	OPLAH	O14841	1288 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	BRD1	O95696	1058 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	AR	P10275	920 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	GATM	P50440	423 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	ADAM17	P78536	824 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	ARHGAP4	P98171	946 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	QRICH1	Q2TAL8	776 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	NAALADL2	Q58DX5	795 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	RUFY4	Q6ZNE9	571 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	TRIM50	Q86XT4	487 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	ATP8B4	Q8TF62	1192 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	LMBR1	Q8WVP7	490 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	LINC01599	Q8WXQ3	324 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	RMDN1	Q96DB5	314 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	GPATCH3	Q96I76	525 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	MAF1	Q9H063	256 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	CDH22	Q9UJ99	828 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	DDX19B	Q9UMR2	479 aa		13.72	□□□□□ -0.21
CLK3-222	ENST00000568232	GNAT1	P11488	350 aa		13.71	□□□□□ -0.21
CLK3-222	ENST00000568232	GPATCH4	Q5T3I0	446 aa	Known RBP	13.71	□□□□□ -0.21
CLK3-222	ENST00000568232	KCNV1	Q6PIU1	500 aa		13.71	□□□□□ -0.21
CLK3-222	ENST00000568232	RTN4RL1	Q86UN2	441 aa	Predicted RBP	13.71	□□□□□ -0.21
CLK3-222	ENST00000568232	VSIG10L	Q86VR7	867 aa		13.71	□□□□□ -0.21
CLK3-222	ENST00000568232	CRIPAK	Q8N1N5	446 aa		13.71	□□□□□ -0.21
CLK3-222	ENST00000568232	TTC14	Q96N46	770 aa		13.71	□□□□□ -0.21
CLK3-222	ENST00000568232	ZKSCAN3	Q9BRR0	538 aa		13.71	□□□□□ -0.21
CLK3-222	ENST00000568232	S1PR5	Q9H228	398 aa		13.71	□□□□□ -0.21
CLK3-222	ENST00000568232	VAT1L	Q9HCJ6	419 aa		13.71	□□□□□ -0.21
CLK3-222	ENST00000568232	TSHZ2	Q9NRE2	1034 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms