RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SLC9A2Q9UBY0 812 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 RBM19Q9Y4C8 960 aaKnown RBP11.09□□□□□ -0.63
CLK3-208ENST00000562626 KBTBD13C9JR72 458 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 MAFGO15525 162 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 CHMP2AO43633 222 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 LGALS2P05162 132 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 PDCP20941 246 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 TCF7P36402 384 aaPredicted RBP11.08□□□□□ -0.64
CLK3-208ENST00000562626 ATN1P54259 1190 aaPredicted RBP11.08□□□□□ -0.64
CLK3-208ENST00000562626 ACTR2P61160 394 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 BECN1Q14457 450 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 IL17AQ16552 155 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 LRRC26Q2I0M4 334 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 UTP14CQ5TAP6 766 aaKnown RBP11.08□□□□□ -0.64
CLK3-208ENST00000562626 LRCH2Q5VUJ6 765 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 CDHR1Q96JP9 859 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 TSEN34Q9BSV6 310 aaKnown RBP11.08□□□□□ -0.64
CLK3-208ENST00000562626 C11orf49Q9H6J7 331 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 GBF1Q92538 1859 aa11.08□□□□□ -0.64
CLK3-208ENST00000562626 HAS3O00219 553 aa11.07□□□□□ -0.64
CLK3-208ENST00000562626 NEMFO60524 1076 aa11.07□□□□□ -0.64
CLK3-208ENST00000562626 ATG7O95352 703 aa11.07□□□□□ -0.64
CLK3-208ENST00000562626 GCFC2P16383 781 aaKnown RBP11.07□□□□□ -0.64
CLK3-208ENST00000562626 ATP4AP20648 1035 aa11.07□□□□□ -0.64
CLK3-208ENST00000562626 CPT1AP50416 773 aa11.07□□□□□ -0.64
CLK3-208ENST00000562626 UGCGQ16739 394 aa11.07□□□□□ -0.64
CLK3-208ENST00000562626 ABHD15Q6UXT9 468 aa11.07□□□□□ -0.64
CLK3-208ENST00000562626 CCDC60Q8IWA6 550 aaPredicted RBP11.07□□□□□ -0.64
CLK3-208ENST00000562626 SDF4Q9BRK5 362 aa11.07□□□□□ -0.64
CLK3-208ENST00000562626 SPC25Q9HBM1 224 aa11.07□□□□□ -0.64
CLK3-208ENST00000562626 CLIC4Q9Y696 253 aa11.07□□□□□ -0.64
CLK3-208ENST00000562626 ELP1O95163 1332 aa11.07□□□□□ -0.64
CLK3-208ENST00000562626 IGKV6D-21A0A0A0MT36 114 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 POTEMA6NI47 508 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 GAS7O60861 476 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 LGR5O75473 907 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 BRD1O95696 1058 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 F13A1P00488 732 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 F2P00734 622 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 SUPT20HL2P0C7V6 817 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 ZSCAN22P10073 491 aaPredicted RBP11.06□□□□□ -0.64
CLK3-208ENST00000562626 TRAPPC10P48553 1259 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 PSEN2P49810 448 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 CHMP4BP1P59074 171 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 GRIN1Q05586 938 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 PTGDRQ13258 359 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 SNX17Q15036 470 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 PTPAQ15257 358 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 CALCRLQ16602 461 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 DGKDQ16760 1214 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 FOXD4L6Q3SYB3 417 aaPredicted RBP11.06□□□□□ -0.64
CLK3-208ENST00000562626 FOXD4L3Q6VB84 417 aaPredicted RBP11.06□□□□□ -0.64
CLK3-208ENST00000562626 SLC39A5Q6ZMH5 540 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 NECAB2Q7Z6G3 386 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 PCSK9Q8NBP7 692 aaKnown RBP11.06□□□□□ -0.64
CLK3-208ENST00000562626 GIMAP8Q8ND71 665 aaPredicted RBP11.06□□□□□ -0.64
CLK3-208ENST00000562626 ZBTB10Q96DT7 871 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 CTAGE1Q96RT6 745 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 USP28Q96RU2 1077 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 RIT2Q99578 217 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 MTG1Q9BT17 334 aaPredicted RBP11.06□□□□□ -0.64
CLK3-208ENST00000562626 TEKT3Q9BXF9 490 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 TBC1D22BQ9NU19 505 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 WRAP73Q9P2S5 460 aaPredicted RBP11.06□□□□□ -0.64
CLK3-208ENST00000562626 NOL7Q9UMY1 257 aaKnown RBP11.06□□□□□ -0.64
CLK3-208ENST00000562626 CEP290O15078 2479 aa11.06□□□□□ -0.64
CLK3-208ENST00000562626 TMEM150BA6NC51 233 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 MOXD2PA6NHM9 499 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 NOP56O00567 594 aaKnown RBP11.05□□□□□ -0.64
CLK3-208ENST00000562626 TBX3O15119 743 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 ZNF862O60290 1169 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 PPFIA4O75335 1185 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 OR52Z1P0C646 297 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 MARK3P27448 753 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 TXKP42681 527 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 CDK7P50613 346 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 RTP1P59025 263 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 ZNF200P98182 395 aaPredicted RBP11.05□□□□□ -0.64
CLK3-208ENST00000562626 PPP2R5CQ13362 524 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 MFSD10Q14728 455 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 SF3A1Q15459 793 aaKnown RBP11.05□□□□□ -0.64
CLK3-208ENST00000562626 KIAA0753Q2KHM9 967 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 NBPF20Q3BBV1 942 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 TRIM60Q495X7 471 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 RILPL1Q5EBL4 403 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 ZNF746Q6NUN9 644 aaPredicted RBP11.05□□□□□ -0.64
CLK3-208ENST00000562626 BRAPQ7Z569 592 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 SLC43A3Q8NBI5 491 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 SEPT1Q8WYJ6 367 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 RNPEPQ9H4A4 650 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 TTC12Q9H892 705 aaPredicted RBP11.05□□□□□ -0.64
CLK3-208ENST00000562626 STARD7Q9NQZ5 370 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 DISC1Q9NRI5 854 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 POLR3EQ9NVU0 708 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 EMSYQ7Z589 1322 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 IGSF9BQ9UPX0 1349 aa11.05□□□□□ -0.64
CLK3-208ENST00000562626 MICAL3Q7RTP6 2002 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 A0A087WWV3 80 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 PP2D1A8MPX8 630 aa11.04□□□□□ -0.64
CLK3-208ENST00000562626 H3BRB1 525 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms