RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 FAHP16930 419 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 KCNA6P17658 529 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 AMY2BP19961 511 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 POU3F2P20265 443 aaPredicted RBP4.88□□□□□ -1.63
VPS35-203ENST00000562420 LIMS1P48059 325 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 ITGA1P56199 1179 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 DLX2Q07687 328 aaPredicted RBP4.88□□□□□ -1.63
VPS35-203ENST00000562420 TAF7LQ5H9L4 462 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 ZCCHC8Q6NZY4 707 aaKnown RBP4.88□□□□□ -1.63
VPS35-203ENST00000562420 ARHGAP36Q6ZRI8 547 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 OTOP1Q7RTM1 612 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 FGD2Q7Z6J4 655 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 DDX53Q86TM3 631 aaKnown RBP4.88□□□□□ -1.63
VPS35-203ENST00000562420 NINJ1Q92982 152 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 PWWP2AQ96N64 755 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 GORASP1Q9BQQ3 440 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 C11orf84Q9BUA3 381 aaPredicted RBP4.88□□□□□ -1.63
VPS35-203ENST00000562420 SMURF1Q9HCE7 757 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 CATSPERZQ9NTU4 200 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 MAN2B1O00754 1011 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 PPP1R12AO14974 1030 aaPredicted RBP4.87□□□□□ -1.63
VPS35-203ENST00000562420 CYP7B1O75881 506 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 CHGBP05060 677 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 HMGB1P09429 215 aaKnown RBP4.87□□□□□ -1.63
VPS35-203ENST00000562420 COL6A2P12110 1019 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 HSD3B2P26439 372 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 FLT3P36888 993 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 BUD31P41223 144 aaPredicted RBP4.87□□□□□ -1.63
VPS35-203ENST00000562420 MECP2P51608 486 aaKnown RBP4.87□□□□□ -1.63
VPS35-203ENST00000562420 HERVK_113P62684 666 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 ARHGAP44Q17R89 818 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 PAN2Q504Q3 1202 aaKnown RBP4.87□□□□□ -1.63
VPS35-203ENST00000562420 CD300LDQ6UXZ3 194 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 OVCH1Q7RTY7 1134 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 CLEC4DQ8WXI8 215 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 TMX1Q9H3N1 280 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 TELO2Q9Y4R8 837 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 ATP23Q9Y6H3 246 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 NCANO14594 1321 aa4.87□□□□□ -1.63
VPS35-203ENST00000562420 SRGAP2CP0DJJ0 459 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 PTPN1P18031 435 aaKnown RBP4.86□□□□□ -1.63
VPS35-203ENST00000562420 THBS2P35442 1172 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 ADAM9Q13443 819 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 TMEM177Q53S58 311 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 PRR31Q5SQ13 230 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 ABHD17CQ6PCB6 329 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 LIPIQ6XZB0 460 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 PROSER1Q86XN7 944 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 KIF18BQ86Y91 864 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 NOSTRINQ8IVI9 506 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 SP8Q8IXZ3 490 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 IRF2BPLQ9H1B7 796 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 LUC7LQ9NQ29 371 aaKnown RBP4.86□□□□□ -1.63
VPS35-203ENST00000562420 DLL4Q9NR61 685 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 NTMQ9P121 344 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 RAPGEFL1Q9UHV5 662 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 CD2APQ9Y5K6 639 aa4.86□□□□□ -1.63
VPS35-203ENST00000562420 FFAR3O14843 346 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 SMARCA5O60264 1052 aaPredicted RBP4.85□□□□□ -1.63
VPS35-203ENST00000562420 OPA1O60313 960 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 RPL13P26373 211 aaKnown RBP4.85□□□□□ -1.63
VPS35-203ENST00000562420 SDHAP31040 664 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 STAT5AP42229 794 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 JAM2P57087 298 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 TKFCQ3LXA3 575 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 CD276Q5ZPR3 534 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 VASNQ6EMK4 673 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 SDE2Q6IQ49 451 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 GIMAP6Q6P9H5 292 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 TTLL7Q6ZT98 887 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 OSTM1Q86WC4 334 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 PTRH1Q86Y79 214 aaKnown RBP4.85□□□□□ -1.63
VPS35-203ENST00000562420 NIM1KQ8IY84 436 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 FAM26EQ8N5C1 309 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 IGSF22Q8N9C0 903 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 DTX3Q8N9I9 347 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 CHST14Q8NCH0 376 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 ZBTB8AQ96BR9 441 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 MFSD3Q96ES6 412 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 NOX5Q96PH1 765 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 BOCQ9BWV1 1114 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 CD244Q9BZW8 370 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 COQ6Q9Y2Z9 468 aa4.85□□□□□ -1.63
VPS35-203ENST00000562420 SLC12A8A0AV02 714 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 ZNF839A8K0R7 811 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 ACOT7O00154 380 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 IGSF3O75054 1194 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 ENO2P09104 434 aaPredicted RBP4.84□□□□□ -1.63
VPS35-203ENST00000562420 SDSP20132 328 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 DNM2P50570 870 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 DBPQ10586 325 aaPredicted RBP4.84□□□□□ -1.63
VPS35-203ENST00000562420 TM4SF20Q53R12 229 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 DALRD3Q5D0E6 543 aaKnown RBP4.84□□□□□ -1.63
VPS35-203ENST00000562420 FAM26FQ5R3K3 315 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 BTBD8Q5XKL5 378 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 EP400NLQ6ZTU2 488 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 UBE2R2Q712K3 238 aaPredicted RBP4.84□□□□□ -1.63
VPS35-203ENST00000562420 PPM1KQ8N3J5 372 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 CISD2Q8N5K1 135 aaKnown RBP4.84□□□□□ -1.63
VPS35-203ENST00000562420 TP53I13Q8NBR0 393 aaPredicted RBP4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms