RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 KIAA1024Q9UPX6 916 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 MYMKA6NI61 221 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 FAM86B1E9PN63 330 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 PDXKO00764 312 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 OPLAHO14841 1288 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 CETN3O15182 167 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 CCDC175P0C221 793 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 FAM86B2P0C5J1 330 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 ALAS1P13196 640 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 ATP1A3P13637 1013 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 RFX1P22670 979 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 FECHP22830 423 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 MTIF2P46199 727 aaKnown RBP8.33□□□□□ -1.08
VPS39-204ENST00000561818 SLC12A3P55017 1021 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 CDK17Q00537 523 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 ENPEPQ07075 957 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 COASYQ13057 564 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 TBX2Q13207 712 aaPredicted RBP8.33□□□□□ -1.08
VPS39-204ENST00000561818 MCM6Q14566 821 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 KRT31Q15323 416 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 ZYXQ15942 572 aaKnown RBP8.33□□□□□ -1.08
VPS39-204ENST00000561818 HERC4Q5GLZ8 1057 aaPredicted RBP8.33□□□□□ -1.08
VPS39-204ENST00000561818 NBPF12Q5TAG4 269 aaPredicted RBP8.33□□□□□ -1.08
VPS39-204ENST00000561818 ARHGEF16Q5VV41 709 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 ISM2Q6H9L7 571 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 CYP26C1Q6V0L0 522 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 CATSPERGQ6ZRH7 1159 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 HS2ST1Q7LGA3 356 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 OTOP1Q7RTM1 612 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 CATSPER3Q86XQ3 398 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 CCDC170Q8IYT3 715 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 CACTINQ8WUQ7 758 aaKnown RBP8.33□□□□□ -1.08
VPS39-204ENST00000561818 UBE2Q2Q8WVN8 375 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 TRERF1Q96PN7 1200 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 ERGIC2Q96RQ1 377 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 HSD17B14Q9BPX1 270 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 TUBGCP2Q9BSJ2 902 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 MKNK1Q9BUB5 465 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 FHDC1Q9C0D6 1143 aaPredicted RBP8.33□□□□□ -1.08
VPS39-204ENST00000561818 TMX1Q9H3N1 280 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 TMEM206Q9H813 350 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 PARVGQ9HBI0 331 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 EMILIN3Q9NT22 766 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 RNF146Q9NTX7 359 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 ANKEF1Q9NU02 776 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.33□□□□□ -1.08
VPS39-204ENST00000561818 TRAF3IP3Q9Y228 551 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 SLC45A1Q9Y2W3 748 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 AFG3L2Q9Y4W6 797 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 PCDHB13Q9Y5F0 798 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 UBIAD1Q9Y5Z9 338 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 ZHX2Q9Y6X8 837 aa8.33□□□□□ -1.08
VPS39-204ENST00000561818 ZNF536O15090 1300 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 SCN4AP35499 1836 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 PHIPQ8WWQ0 1821 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 A0A0U1RQG5 324 aaPredicted RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 SHTN1A0MZ66 631 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 ARHGEF35A5YM69 484 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 SPDYE5A6NIY4 337 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 PP2D1A8MPX8 630 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 MFAP3LO75121 409 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 FAM13AO94988 1023 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 SSBP05455 408 aaKnown RBP eCLIP8.32□□□□□ -1.08
VPS39-204ENST00000561818 TGFB3P10600 412 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 CYP11B2P19099 503 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 TRIM21P19474 475 aaKnown RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 OSBPP22059 807 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 CDC25AP30304 524 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 HOXA13P31271 388 aaPredicted RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 INPP5BP32019 993 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 CYLC1P35663 651 aaPredicted RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 PBX1P40424 430 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 QARSP47897 775 aaKnown RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 KRT83P78385 493 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 IRX3P78415 501 aaPredicted RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 JAG1P78504 1218 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 CCZ1BP86790 482 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 CCZ1P86791 482 aaPredicted RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 UBXN1Q04323 297 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 PPIL2Q13356 520 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 ARID5BQ14865 1188 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 VWA3BQ502W6 1294 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 MIER3Q7Z3K6 550 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 C4orf19Q8IY42 314 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 TRMT44Q8IYL2 757 aaKnown RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 CCAR2Q8N163 923 aaKnown RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 NLGN2Q8NFZ4 835 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 SYTL5Q8TDW5 730 aaPredicted RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 CLEC4DQ8WXI8 215 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 DNAJC19Q96DA6 116 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 CNOT6LQ96LI5 555 aaKnown RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 RMDN3Q96TC7 470 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 NOC4LQ9BVI4 516 aaKnown RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 TSGA10Q9BZW7 698 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 PXMP2Q9NR77 195 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 SAMSN1Q9NSI8 373 aaKnown RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 TYW1Q9NV66 732 aaKnown RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 TBC1D7Q9P0N9 293 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 MYO6Q9UM54 1294 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms