RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-225	ENST00000561391	ARID5A	Q03989	594 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	KIAA2012	Q0VF49	1180 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	KIF22	Q14807	665 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	ZBTB37	Q5TC79	503 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	DPP8	Q6V1X1	898 aa	Predicted RBP	4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	CCDC81	Q6ZN84	652 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	ARMC9	Q7Z3E5	817 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	SMYD4	Q8IYR2	804 aa	Predicted RBP	4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	RNF214	Q8ND24	703 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	ZNF507	Q8TCN5	953 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	ATXN2L	Q8WWM7	1075 aa	Known RBP	4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	LIN37	Q96GY3	246 aa	Predicted RBP	4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	RBM17	Q96I25	401 aa	Known RBP	4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	PTPN18	Q99952	460 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	TINF2	Q9BSI4	451 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	DBNDD1	Q9H9R9	158 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	PRDM7	Q9NQW5	492 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	PPT2	Q9UMR5	302 aa		4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	4.26	□□□□□ -1.73
SPG11-225	ENST00000561391	CACNA1G	O43497	2377 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	FANCG	O15287	622 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	HTR3B	O95264	441 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	NEFM	P07197	916 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	IL6ST	P40189	918 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	MRPS5	P82675	430 aa	Known RBP	4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	CLC	Q05315	142 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	PDE4B	Q07343	736 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	KRTAP1-1	Q07627	177 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	IKZF1	Q13422	519 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	TTLL10	Q6ZVT0	673 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	NECAB2	Q7Z6G3	386 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	SLITRK4	Q8IW52	837 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	RAET1E	Q8TD07	263 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	DIS3L	Q8TF46	1054 aa	Known RBP	4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	XAGE3	Q8WTP9	111 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	ISL2	Q96A47	359 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	WNK4	Q96J92	1243 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	CLMN	Q96JQ2	1002 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	DEFB118	Q96PH6	123 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	FERD3L	Q96RJ6	166 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	CRAMP1	Q96RY5	1269 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	RTFDC1	Q9BY42	306 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	TANGO6	Q9C0B7	1094 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	WNT10A	Q9GZT5	417 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	TTYH1	Q9H313	450 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	GSX1	Q9H4S2	264 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	KLHL3	Q9UH77	587 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	ATP6V0A2	Q9Y487	856 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	RIPOR2	Q9Y4F9	1068 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	MRVI1	Q9Y6F6	885 aa		4.25	□□□□□ -1.73
SPG11-225	ENST00000561391	TCF20	Q9UGU0	1960 aa	Known RBP	4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	UPK3BL1	B0FP48	263 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	UPK3BL2	E5RIL1	263 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	SMIM22	K7EJ46	135 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	SSB	P05455	408 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	INHBB	P09529	407 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	ATF4	P18848	351 aa	Predicted RBP	4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	RPS12	P25398	132 aa	Known RBP	4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	UBXN2A	P68543	259 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	NHLH1	Q02575	133 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	RING1	Q06587	406 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	CRY2	Q49AN0	593 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	AMOT	Q4VCS5	1084 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	UBE3D	Q7Z6J8	389 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	HID1	Q8IV36	788 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	RASGRP4	Q8TDF6	673 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	ANAPC16	Q96DE5	110 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	SPATA32	Q96LK8	384 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	CRBN	Q96SW2	442 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	DPH2	Q9BQC3	489 aa	Predicted RBP	4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	LRRC3	Q9BY71	257 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	SLC52A2	Q9HAB3	445 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	FBRS	Q9HAH7	460 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	MKNK2	Q9HBH9	465 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	REV1	Q9UBZ9	1251 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	PCOLCE2	Q9UKZ9	415 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	RAB3GAP2	Q9H2M9	1393 aa		4.24	□□□□□ -1.73
SPG11-225	ENST00000561391	KIF7	Q2M1P5	1343 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	PIEZO1	Q92508	2521 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	KDM3B	Q7LBC6	1761 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	PSPN	O60542	156 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	ZBTB48	P10074	688 aa	Predicted RBP	4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	NTF4	P34130	210 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	AFM	P43652	599 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	PSMC4	P43686	418 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	PRMT2	P55345	433 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	CTSW	P56202	376 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	LACTB	P83111	547 aa	Predicted RBP	4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	ZP2	Q05996	745 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	EIF4A2	Q14240	407 aa	Known RBP	4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	HLF	Q16534	295 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	NKG7	Q16617	165 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	NBPF9	Q3BBW0	867 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	CLEC4G	Q6UXB4	293 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	PRR23B	Q6ZRT6	265 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	SP8	Q8IXZ3	490 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	REXO1	Q8N1G1	1221 aa	Known RBP	4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	SLC43A3	Q8NBI5	491 aa		4.23	□□□□□ -1.73
SPG11-225	ENST00000561391	FAM13C	Q8NE31	585 aa		4.23	□□□□□ -1.73

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