RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 M0R2C6 588 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 MEFVO15553 781 aaPredicted RBP2.27□□□□□ -2.05
USP3-209ENST00000558925 EFCAB14O75071 495 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 FZD7O75084 574 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 ZNF205O95201 554 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 CPP00450 1065 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 PLATP00750 562 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 AMHP03971 560 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 ASLP04424 464 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 CKMP06732 381 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 POU3F2P20265 443 aaPredicted RBP2.27□□□□□ -2.05
USP3-209ENST00000558925 BMP8BP34820 402 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 IGFALSP35858 605 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 SEPHS1P49903 392 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 TMPRSS15P98073 1019 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 STAT4Q14765 748 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 LRRC41Q15345 812 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 CFAP100Q494V2 611 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 ACBD5Q5T8D3 534 aaPredicted RBP2.27□□□□□ -2.05
USP3-209ENST00000558925 OLFML2BQ68BL8 750 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 FSTL4Q6MZW2 842 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 ZCCHC8Q6NZY4 707 aaKnown RBP2.27□□□□□ -2.05
USP3-209ENST00000558925 RNF111Q6ZNA4 994 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 MAMDC2Q7Z304 686 aaPredicted RBP2.27□□□□□ -2.05
USP3-209ENST00000558925 LIMS2Q7Z4I7 341 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 MTDHQ86UE4 582 aaKnown RBP2.27□□□□□ -2.05
USP3-209ENST00000558925 ZNF575Q86XF7 245 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 CARFQ8N187 725 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 PPM1KQ8N3J5 372 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 CISD2Q8N5K1 135 aaKnown RBP2.27□□□□□ -2.05
USP3-209ENST00000558925 ZNF655Q8N720 491 aaPredicted RBP2.27□□□□□ -2.05
USP3-209ENST00000558925 IGSF22Q8N9C0 903 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 DCAF4Q8WV16 495 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 MAGEB10Q96LZ2 347 aaPredicted RBP2.27□□□□□ -2.05
USP3-209ENST00000558925 CDADC1Q9BWV3 514 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 ASPSCR1Q9BZE9 553 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 CCDC8Q9H0W5 538 aaPredicted RBP2.27□□□□□ -2.05
USP3-209ENST00000558925 VPS11Q9H270 941 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 INTS7Q9NVH2 962 aaKnown RBP2.27□□□□□ -2.05
USP3-209ENST00000558925 TCFL5Q9UL49 500 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 MAPRE3Q9UPY8 281 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 HS3ST3A1Q9Y663 406 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 PMF1-BGLAPU3KQ54 211 aa2.27□□□□□ -2.05
USP3-209ENST00000558925 WASHC2CQ9Y4E1 1318 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 ARVCFO00192 962 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 CBX4O00257 560 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 AQP7O14520 342 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 NEMP1O14524 444 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 KCNK3O14649 394 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 FGF10O15520 208 aaPredicted RBP2.26□□□□□ -2.05
USP3-209ENST00000558925 GPR39O43194 453 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 PYGMP11217 842 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 PRKCAP17252 672 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 FPR2P25090 351 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 LTBRP36941 435 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 BCL6P41182 706 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 ADCYAP1R1P41586 468 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 DNM2P50570 870 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 GUCY2FP51841 1108 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 GJA9P57773 515 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 GPR85P60893 370 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 LAPTM5Q13571 262 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 MTMR1Q13613 665 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 WWC2Q6AWC2 1192 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 RCSD1Q6JBY9 416 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.26□□□□□ -2.05
USP3-209ENST00000558925 LBX2Q6XYB7 198 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 NOL8Q76FK4 1167 aaKnown RBP2.26□□□□□ -2.05
USP3-209ENST00000558925 DDX46Q7L014 1031 aaKnown RBP2.26□□□□□ -2.05
USP3-209ENST00000558925 SLCO6A1Q86UG4 719 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 NLRP10Q86W26 655 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 ZNF761Q86XN6 746 aaPredicted RBP2.26□□□□□ -2.05
USP3-209ENST00000558925 FMNL3Q8IVF7 1028 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 ZC3H7AQ8IWR0 971 aaKnown RBP2.26□□□□□ -2.05
USP3-209ENST00000558925 IFNL3Q8IZI9 196 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 LINC00116Q8NCU8 138 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 RCBTB1Q8NDN9 531 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 TMEM52Q8NDY8 209 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 PCDH19Q8TAB3 1148 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 DIO2Q92813 273 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 TSR2Q969E8 191 aaKnown RBP2.26□□□□□ -2.05
USP3-209ENST00000558925 MTMR8Q96EF0 704 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 TMX1Q9H3N1 280 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 IPPKQ9H8X2 491 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 METTL14Q9HCE5 456 aaKnown RBP2.26□□□□□ -2.05
USP3-209ENST00000558925 VTA1Q9NP79 307 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 TYW1Q9NV66 732 aaKnown RBP2.26□□□□□ -2.05
USP3-209ENST00000558925 SPATA6Q9NWH7 488 aaPredicted RBP2.26□□□□□ -2.05
USP3-209ENST00000558925 THG1LQ9NWX6 298 aaKnown RBP2.26□□□□□ -2.05
USP3-209ENST00000558925 H2AFY2Q9P0M6 372 aaPredicted RBP2.26□□□□□ -2.05
USP3-209ENST00000558925 SAMD15Q9P1V8 674 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 CHPF2Q9P2E5 772 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 FBLN5Q9UBX5 448 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 MCM8Q9UJA3 840 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 TSC22D4Q9Y3Q8 395 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 PCDHA2Q9Y5H9 948 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 NPFFR2Q9Y5X5 522 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 EID1Q9Y6B2 187 aa2.26□□□□□ -2.05
USP3-209ENST00000558925 PHLDB1Q86UU1 1377 aa2.25□□□□□ -2.05
USP3-209ENST00000558925 NPHP3-ACAD11A0A0J9YXS1 232 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms