RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PDE6CP51160 858 aa15.02■□□□□ -0
SHMT2-226ENST00000556825 DIXDC1Q155Q3 683 aa15.02■□□□□ -0
SHMT2-226ENST00000556825 GSTA3Q16772 222 aa15.02■□□□□ -0
SHMT2-226ENST00000556825 MDM1Q8TC05 714 aa15.02■□□□□ -0
SHMT2-226ENST00000556825 RBM12Q9NTZ6 932 aaKnown RBP15.02■□□□□ -0
SHMT2-226ENST00000556825 ZNF711Q9Y462 761 aa15.02■□□□□ -0
SHMT2-226ENST00000556825 ARHGAP23Q9P227 1491 aa15.02■□□□□ -0
SHMT2-226ENST00000556825 MYH7P12883 1935 aa15.02■□□□□ -0
SHMT2-226ENST00000556825 CARMIL3Q8ND23 1372 aa15.02■□□□□ -0
SHMT2-226ENST00000556825 ESYT3A0FGR9 886 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 PPP6R2O75170 966 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 ASMTLO95671 621 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 PYGMP11217 842 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 CTNNA1P35221 906 aaKnown RBP15.02□□□□□ -0.01
SHMT2-226ENST00000556825 HALP42357 657 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 CCT8P50990 548 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 OCRLQ01968 901 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 RRS1Q15050 365 aaKnown RBP15.02□□□□□ -0.01
SHMT2-226ENST00000556825 IMMTQ16891 758 aaKnown RBP15.02□□□□□ -0.01
SHMT2-226ENST00000556825 NEPROQ6NW34 567 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 POTEEQ6S8J3 1075 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 EIF1ADQ8N9N8 165 aaKnown RBP15.02□□□□□ -0.01
SHMT2-226ENST00000556825 KRI1Q8N9T8 703 aaKnown RBP15.02□□□□□ -0.01
SHMT2-226ENST00000556825 RBM46Q8TBY0 533 aaKnown RBP15.02□□□□□ -0.01
SHMT2-226ENST00000556825 DIS3LQ8TF46 1054 aaKnown RBP15.02□□□□□ -0.01
SHMT2-226ENST00000556825 LRRC45Q96CN5 670 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 OLFM3Q96PB7 478 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 DUSP9Q99956 384 aaKnown RBP15.02□□□□□ -0.01
SHMT2-226ENST00000556825 DDX23Q9BUQ8 820 aaKnown RBP15.02□□□□□ -0.01
SHMT2-226ENST00000556825 HYOU1Q9Y4L1 999 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 ROBO2Q9HCK4 1378 aa15.02□□□□□ -0.01
SHMT2-226ENST00000556825 PCDH11XQ9BZA7 1347 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 A0A0G2JS52 829 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 SNX3O60493 162 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 OAS1P00973 400 aaKnown RBP15.01□□□□□ -0.01
SHMT2-226ENST00000556825 ETS2P15036 469 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 CDC25AP30304 524 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 TTLL12Q14166 644 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-226ENST00000556825 TSR1Q2NL82 804 aaKnown RBP15.01□□□□□ -0.01
SHMT2-226ENST00000556825 PHLDB3Q6NSJ2 640 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 NAT14Q8WUY8 206 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 UTP4Q969X6 686 aaKnown RBP15.01□□□□□ -0.01
SHMT2-226ENST00000556825 CGREF1Q99674 301 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 LACRTQ9GZZ8 138 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 CCDC134Q9H6E4 229 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 ZRANB1Q9UGI0 708 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 TRIM33Q9UPN9 1127 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 TBC1D30Q9Y2I9 924 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 TTLL3Q9Y4R7 772 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 HEY1Q9Y5J3 304 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 CCDC61Q9Y6R9 512 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 FOXN1O15353 648 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 TBC1D12O60347 775 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 LMNAP02545 664 aaKnown RBP15.01□□□□□ -0.01
SHMT2-226ENST00000556825 SHBGP04278 402 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 HMOX1P09601 288 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 VAV1P15498 845 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 GNAT2P19087 354 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 SF3A3Q12874 501 aaKnown RBP eCLIP15.01□□□□□ -0.016e-8■■□□□ 12.4
SHMT2-226ENST00000556825 FOXD4Q12950 439 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-226ENST00000556825 UAP1Q16222 522 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-226ENST00000556825 WASHC4Q2M389 1173 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 CCDC153Q494R4 210 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 ZC2HC1CQ53FD0 456 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-226ENST00000556825 MIGA2Q7L4E1 593 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 G2E3Q7L622 706 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 RSPH3Q86UC2 560 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 SPATA24Q86W54 205 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 SYT2Q8N9I0 419 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-226ENST00000556825 USP33Q8TEY7 942 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 ATXN2LQ8WWM7 1075 aaKnown RBP15.01□□□□□ -0.01
SHMT2-226ENST00000556825 TLCD1Q96CP7 247 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 QPCTLQ9NXS2 382 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 IL1RAPL1Q9NZN1 696 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 STOML1Q9UBI4 398 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 TBX22Q9Y458 520 aa15.01□□□□□ -0.01
SHMT2-226ENST00000556825 USP15Q9Y4E8 981 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-226ENST00000556825 NCKAP5LQ9HCH0 1330 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 LMTK3Q96Q04 1460 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 MYH8P13535 1937 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 RCCD1A6NED2 376 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 ZSCAN5CA6NGD5 496 aaPredicted RBP15□□□□□ -0.01
SHMT2-226ENST00000556825 DCDC2CA8MYV0 355 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 BOLA2-SMG1P6H3BVE0 249 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 GSTT2P0CG29 244 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 GSTT2BP0CG30 244 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 SERPINB8P50452 374 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 RTP1P59025 263 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 CCDC152Q4G0S7 254 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 SH3D19Q5HYK7 790 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 WASHC2DQ5SRD0 308 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 USPL1Q5W0Q7 1092 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 CYP4X1Q8N118 509 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 KCNH3Q9ULD8 1083 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 KANSL1LA0AUZ9 987 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 FAM83GA6ND36 823 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 SART1O43290 800 aaKnown RBP15□□□□□ -0.01
SHMT2-226ENST00000556825 TACC1O75410 805 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 DMPKQ09013 629 aa15□□□□□ -0.01
SHMT2-226ENST00000556825 ZNF827Q17R98 1081 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms