RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 TXKP42681 527 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 GUCY2FP51841 1108 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 TMEM132BQ14DG7 1078 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 SEC23AQ15436 765 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 ARHGAP44Q17R89 818 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 PLEKHN1Q494U1 663 aaPredicted RBP7.91□□□□□ -1.14
LINC00643-204ENST00000555934 ATP13A4Q4VNC1 1196 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 BTBD8Q5XKL5 378 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 CREB3L3Q68CJ9 461 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 OTOP1Q7RTM1 612 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.91□□□□□ -1.14
LINC00643-204ENST00000555934 STAG1Q8WVM7 1258 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 KLHL14Q9P2G3 628 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 PLA2G2DQ9UNK4 145 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 ZNF652Q9Y2D9 606 aa7.91□□□□□ -1.14
LINC00643-204ENST00000555934 TCRBV5S2A0A599 114 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 FAM90A27PA6NNH2 459 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 DVL2O14641 736 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 GPR39O43194 453 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 BRINP1O60477 761 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 HIP1RO75146 1068 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 KATNA1O75449 491 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 HMGB1P09429 215 aaKnown RBP7.9□□□□□ -1.14
LINC00643-204ENST00000555934 LSSP48449 732 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 KIF11P52732 1056 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 NR1I3Q14994 352 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 FIGNQ5HY92 759 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 MPZL3Q6UWV2 235 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 HDGFL2Q7Z4V5 671 aaPredicted RBP7.9□□□□□ -1.14
LINC00643-204ENST00000555934 FERMT3Q86UX7 667 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 NLGN4XQ8N0W4 816 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 KIAA1958Q8N8K9 716 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 FAM168AQ92567 244 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 LIN37Q96GY3 246 aaPredicted RBP7.9□□□□□ -1.14
LINC00643-204ENST00000555934 PCIF1Q9H4Z3 704 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 KCNK12Q9HB15 430 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 EMC7Q9NPA0 242 aa7.9□□□□□ -1.14
LINC00643-204ENST00000555934 ZNF174Q15697 407 aa7.89□□□□□ -1.15
LINC00643-204ENST00000555934 ZC3H14Q6PJT7 736 aaKnown RBP7.89□□□□□ -1.15
LINC00643-204ENST00000555934 TMC6Q7Z403 805 aa7.89□□□□□ -1.15
LINC00643-204ENST00000555934 ZNF605Q86T29 641 aa7.89□□□□□ -1.15
LINC00643-204ENST00000555934 C11orf74Q86VG3 221 aa7.89□□□□□ -1.15
LINC00643-204ENST00000555934 TOMM22Q9NS69 142 aa7.89□□□□□ -1.15
LINC00643-204ENST00000555934 SLC5A4Q9NY91 659 aa7.89□□□□□ -1.15
LINC00643-204ENST00000555934 APOBEC2Q9Y235 224 aaKnown RBP7.89□□□□□ -1.15
LINC00643-204ENST00000555934 NUB1Q9Y5A7 615 aa7.89□□□□□ -1.15
LINC00643-204ENST00000555934 ARID1BQ8NFD5 2236 aaPredicted RBP7.88□□□□□ -1.15
LINC00643-204ENST00000555934 CARMIL2Q6F5E8 1435 aa7.88□□□□□ -1.15
LINC00643-204ENST00000555934 PRAMEF25A6NGN4 478 aa7.88□□□□□ -1.15
LINC00643-204ENST00000555934 ZEB2O60315 1214 aa7.88□□□□□ -1.15
LINC00643-204ENST00000555934 PTPN1P18031 435 aaKnown RBP7.88□□□□□ -1.15
LINC00643-204ENST00000555934 ZNF200P98182 395 aaPredicted RBP7.88□□□□□ -1.15
LINC00643-204ENST00000555934 BRDTQ58F21 947 aaPredicted RBP7.88□□□□□ -1.15
LINC00643-204ENST00000555934 RNF219Q5W0B1 726 aaPredicted RBP7.88□□□□□ -1.15
LINC00643-204ENST00000555934 CYP4F22Q6NT55 531 aa7.88□□□□□ -1.15
LINC00643-204ENST00000555934 PHOSPHO1Q8TCT1 267 aa7.88□□□□□ -1.15
LINC00643-204ENST00000555934 ALG3Q92685 438 aa7.88□□□□□ -1.15
LINC00643-204ENST00000555934 DIRC2Q96SL1 478 aa7.88□□□□□ -1.15
LINC00643-204ENST00000555934 ELF4Q99607 663 aaPredicted RBP7.88□□□□□ -1.15
LINC00643-204ENST00000555934 YIPF4Q9BSR8 244 aa7.88□□□□□ -1.15
LINC00643-204ENST00000555934 MS4A5Q9H3V2 200 aa7.88□□□□□ -1.15
LINC00643-204ENST00000555934 PHLDB1Q86UU1 1377 aa7.87□□□□□ -1.15
LINC00643-204ENST00000555934 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.87□□□□□ -1.15
LINC00643-204ENST00000555934 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.87□□□□□ -1.15
LINC00643-204ENST00000555934 TGM5O43548 720 aa7.87□□□□□ -1.15
LINC00643-204ENST00000555934 BUB1BO60566 1050 aaPredicted RBP7.87□□□□□ -1.15
LINC00643-204ENST00000555934 CLASP2O75122 1294 aaKnown RBP7.87□□□□□ -1.15
LINC00643-204ENST00000555934 ZBTB7AO95365 584 aa7.87□□□□□ -1.15
LINC00643-204ENST00000555934 PDGFRBP09619 1106 aa7.87□□□□□ -1.15
LINC00643-204ENST00000555934 PTX3P26022 381 aaPredicted RBP7.87□□□□□ -1.15
LINC00643-204ENST00000555934 VIPR1P32241 457 aa7.87□□□□□ -1.15
LINC00643-204ENST00000555934 STAT5AP42229 794 aa7.87□□□□□ -1.15
LINC00643-204ENST00000555934 MAPKAPK2P49137 400 aa7.87□□□□□ -1.15
LINC00643-204ENST00000555934 OCRLQ01968 901 aa7.87□□□□□ -1.15
LINC00643-204ENST00000555934 IQSEC1Q6DN90 963 aa7.87□□□□□ -1.15
LINC00643-204ENST00000555934 SPATS2Q86XZ4 545 aaKnown RBP7.87□□□□□ -1.15
LINC00643-204ENST00000555934 MTMR8Q96EF0 704 aa7.87□□□□□ -1.15
LINC00643-204ENST00000555934 CCDC8Q9H0W5 538 aaPredicted RBP7.87□□□□□ -1.15
LINC00643-204ENST00000555934 B3GALT1Q9Y5Z6 326 aa7.87□□□□□ -1.15
LINC00643-204ENST00000555934 WASHC2CQ9Y4E1 1318 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 ZNF503-AS2A6NEH8 195 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 ACOT7O00154 380 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 EPHA5P54756 1037 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 ITKQ08881 620 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 DDB1Q16531 1140 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 PAN2Q504Q3 1202 aaKnown RBP7.86□□□□□ -1.15
LINC00643-204ENST00000555934 IRF2BP1Q8IU81 584 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 TRIM48Q8IWZ4 208 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 EFHBQ8N7U6 833 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 DLG3Q92796 817 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 ERCC4Q92889 916 aaPredicted RBP7.86□□□□□ -1.15
LINC00643-204ENST00000555934 TSPAN17Q96FV3 270 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 SMAD5Q99717 465 aaKnown RBP7.86□□□□□ -1.15
LINC00643-204ENST00000555934 TRIM8Q9BZR9 551 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 VTA1Q9NP79 307 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 KCNH7Q9NS40 1196 aa7.86□□□□□ -1.15
LINC00643-204ENST00000555934 LCHNA4D1U4 455 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 ALG1L2C9J202 215 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 PRKD3O94806 890 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 C4BPAP04003 597 aaKnown RBP7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms