RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 KIAA0753Q2KHM9 967 aa16■□□□□ 0.15
PTCH1-226ENST00000553011 NFRKBQ6P4R8 1299 aa16■□□□□ 0.15
PTCH1-226ENST00000553011 SNX21Q969T3 373 aa16■□□□□ 0.15
PTCH1-226ENST00000553011 KATNAL1Q9BW62 490 aa16■□□□□ 0.15
PTCH1-226ENST00000553011 TRPV6Q9H1D0 765 aa16■□□□□ 0.15
PTCH1-226ENST00000553011 TRMT13Q9NUP7 481 aaKnown RBP16■□□□□ 0.15
PTCH1-226ENST00000553011 DDX25Q9UHL0 483 aaKnown RBP16■□□□□ 0.15
PTCH1-226ENST00000553011 TRIM43BA6NCK2 446 aa15.99■□□□□ 0.15
PTCH1-226ENST00000553011 H3BRB1 525 aa15.99■□□□□ 0.15
PTCH1-226ENST00000553011 WNT7AO00755 349 aa15.99■□□□□ 0.15
PTCH1-226ENST00000553011 TLR3O15455 904 aaKnown RBP15.99■□□□□ 0.15
PTCH1-226ENST00000553011 B4GALT4O60513 344 aa15.99■□□□□ 0.15
PTCH1-226ENST00000553011 CCNT1O60563 726 aaKnown RBP15.99■□□□□ 0.15
PTCH1-226ENST00000553011 CD4P01730 458 aa15.99■□□□□ 0.15
PTCH1-226ENST00000553011 SLC5A5Q92911 643 aa15.99■□□□□ 0.15
PTCH1-226ENST00000553011 TRIM43Q96BQ3 446 aaPredicted RBP15.99■□□□□ 0.15
PTCH1-226ENST00000553011 PCYT2Q99447 389 aa15.99■□□□□ 0.15
PTCH1-226ENST00000553011 SEZ6LQ9BYH1 1024 aa15.99■□□□□ 0.15
PTCH1-226ENST00000553011 FOXP1Q9H334 677 aaPredicted RBP15.99■□□□□ 0.15
PTCH1-226ENST00000553011 TUT1Q9H6E5 874 aaKnown RBP15.99■□□□□ 0.15
PTCH1-226ENST00000553011 TBC1D22BQ9NU19 505 aa15.99■□□□□ 0.15
PTCH1-226ENST00000553011 FOXD4L1Q9NU39 408 aa15.99■□□□□ 0.15
PTCH1-226ENST00000553011 HDAC6Q9UBN7 1215 aa15.99■□□□□ 0.15
PTCH1-226ENST00000553011 GCFC2P16383 781 aaKnown RBP15.98■□□□□ 0.15
PTCH1-226ENST00000553011 ATP2B1P20020 1258 aa15.98■□□□□ 0.15
PTCH1-226ENST00000553011 GNL2Q13823 731 aaKnown RBP15.98■□□□□ 0.15
PTCH1-226ENST00000553011 PRPF38BQ5VTL8 546 aaKnown RBP15.98■□□□□ 0.15
PTCH1-226ENST00000553011 PPP4R3AQ6IN85 833 aa15.98■□□□□ 0.15
PTCH1-226ENST00000553011 ETNPPLQ8TBG4 499 aa15.98■□□□□ 0.15
PTCH1-226ENST00000553011 TMEM39AQ9NV64 488 aa15.98■□□□□ 0.15
PTCH1-226ENST00000553011 TBX21Q9UL17 535 aa15.98■□□□□ 0.15
PTCH1-226ENST00000553011 EVPLQ92817 2033 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 KIAA0355O15063 1070 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 GAS7O60861 476 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 LGR5O75473 907 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 ATG7O95352 703 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 ITGB8P26012 769 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 PTPN11Q06124 597 aaPredicted RBP15.97■□□□□ 0.15
PTCH1-226ENST00000553011 LRCH2Q5VUJ6 765 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 LARP1BQ659C4 914 aaKnown RBP15.97■□□□□ 0.15
PTCH1-226ENST00000553011 GDF6Q6KF10 455 aaPredicted RBP15.97■□□□□ 0.15
PTCH1-226ENST00000553011 ZNF746Q6NUN9 644 aaPredicted RBP15.97■□□□□ 0.15
PTCH1-226ENST00000553011 SESTD1Q86VW0 696 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 POTEDQ86YR6 584 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 NOSTRINQ8IVI9 506 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 HSCBQ8IWL3 235 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 C7orf31Q8N865 590 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 GLG1Q92896 1179 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 RIT2Q99578 217 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 PRKAG2Q9UGJ0 569 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 ZNF215Q9UL58 517 aaPredicted RBP15.97■□□□□ 0.15
PTCH1-226ENST00000553011 SCN5AQ14524 2016 aa15.97■□□□□ 0.15
PTCH1-226ENST00000553011 EMSYQ7Z589 1322 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 H3BQV1 296 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 CHMP2AO43633 222 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 PSMD10O75832 226 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 SUPT20HL2P0C7V6 817 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 CYP2C9P11712 490 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 U2AF2P26368 475 aaKnown RBP eCLIP15.96■□□□□ 0.15
PTCH1-226ENST00000553011 MARK3P27448 753 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 ZNF200P98182 395 aaPredicted RBP15.96■□□□□ 0.15
PTCH1-226ENST00000553011 KRT76Q01546 638 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 HIC1Q14526 733 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 MCTP1Q6DN14 999 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 ABHD15Q6UXT9 468 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 HAS1Q92839 578 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 INTS4Q96HW7 963 aaKnown RBP15.96■□□□□ 0.15
PTCH1-226ENST00000553011 NAP1L4Q99733 375 aaKnown RBP15.96■□□□□ 0.15
PTCH1-226ENST00000553011 TEKT3Q9BXF9 490 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 UNC45AQ9H3U1 944 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 RNPEPQ9H4A4 650 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 SMARCAD1Q9H4L7 1026 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 KCNMB3Q9NPA1 279 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 GTF2IRD1Q9UHL9 959 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 TCEAL9Q9UHQ7 104 aa15.96■□□□□ 0.15
PTCH1-226ENST00000553011 IGKV6D-21A0A0A0MT36 114 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 BACH1O14867 736 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 SMIM10L2AP0DMW4 78 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 SMIM10L2BP0DMW5 78 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 RAG1P15918 1043 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 MAGEA10P43363 369 aaPredicted RBP15.95■□□□□ 0.14
PTCH1-226ENST00000553011 MDM2Q00987 491 aaPredicted RBP15.95■□□□□ 0.14
PTCH1-226ENST00000553011 PTGISQ16647 500 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 MIS18BP1Q6P0N0 1132 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 CCDC60Q8IWA6 550 aaPredicted RBP15.95■□□□□ 0.14
PTCH1-226ENST00000553011 CTAGE1Q96RT6 745 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 PPP1R12CQ9BZL4 782 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 AZI2Q9H6S1 392 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 ERAP1Q9NZ08 941 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 TET1Q8NFU7 2136 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 TANC1Q9C0D5 1861 aa15.95■□□□□ 0.14
PTCH1-226ENST00000553011 UMODL1Q5DID0 1318 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 WDR64B1ANS9 1081 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 STAT5BP51692 787 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 NBR1Q14596 966 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 ZNF174Q15697 407 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 SWSAP1Q6NVH7 229 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 B3GNT9Q6UX72 402 aa15.94■□□□□ 0.14
PTCH1-226ENST00000553011 SMAP1Q8IYB5 467 aaPredicted RBP15.94■□□□□ 0.14
PTCH1-226ENST00000553011 BADQ92934 168 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms