RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 PALLDQ8WX93 1383 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 FYB1O15117 783 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 SRGAP3O43295 1099 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 UBOX5O94941 541 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 ZNF205O95201 554 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 P4HBP07237 508 aaKnown RBP4.97□□□□□ -1.61
LIMA1-206ENST00000550611 ATF2P15336 505 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 BMP8BP34820 402 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 GDF5P43026 501 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 AMPHP49418 695 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 GJA9P57773 515 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 MAP2K1Q02750 393 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-206ENST00000550611 LMNB2Q03252 620 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 SNW1Q13573 536 aaKnown RBP4.97□□□□□ -1.61
LIMA1-206ENST00000550611 CARFQ8N187 725 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 SLC17A8Q8NDX2 589 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 PIGBQ92521 554 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 SMARCC1Q92922 1105 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-206ENST00000550611 COG3Q96JB2 828 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 TESK2Q96S53 571 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 SCAND2PQ9GZW5 306 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-206ENST00000550611 IMPACTQ9P2X3 320 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 VIRMAQ69YN4 1812 aaKnown RBP4.97□□□□□ -1.61
LIMA1-206ENST00000550611 KIAA1551Q9HCM1 1747 aa4.97□□□□□ -1.61
LIMA1-206ENST00000550611 RTL1A6NKG5 1358 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 CYR61O00622 381 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 DDNO94850 711 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-206ENST00000550611 CYBBP04839 570 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 C6P13671 934 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 TACR2P21452 398 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 FXR1P51114 621 aaKnown RBP eCLIP4.96□□□□□ -1.62
LIMA1-206ENST00000550611 RAD51AP2Q09MP3 1159 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 CAMK2GQ13555 558 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-206ENST00000550611 RRS1Q15050 365 aaKnown RBP4.96□□□□□ -1.62
LIMA1-206ENST00000550611 HSP90AB2PQ58FF8 381 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 CYP4F22Q6NT55 531 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 PAQR3Q6TCH7 311 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 RAPGEF4Q8WZA2 1011 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 C8orf49Q96NF6 230 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 MRIQ9BWK5 157 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 CARD11Q9BXL7 1154 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 PRDM14Q9GZV8 571 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 SLITRK6Q9H5Y7 841 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 POLR3KQ9Y2Y1 108 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-206ENST00000550611 LY75O60449 1722 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 PKD1L3Q7Z443 1732 aa4.96□□□□□ -1.62
LIMA1-206ENST00000550611 FAM208AQ9UK61 1670 aaKnown RBP4.96□□□□□ -1.62
LIMA1-206ENST00000550611 MON2Q7Z3U7 1717 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 INSRP06213 1382 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 RASSF10A6NK89 507 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 F13A1P00488 732 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 SLPIP03973 132 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 ACVRL1P37023 503 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 ST13P50502 369 aaKnown RBP4.95□□□□□ -1.62
LIMA1-206ENST00000550611 MVKQ03426 396 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 ITPK1Q13572 414 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 GPR101Q96P66 508 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-206ENST00000550611 JMJD8Q96S16 334 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 CDADC1Q9BWV3 514 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 CHST7Q9NS84 486 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 ABT1Q9ULW3 272 aaKnown RBP4.95□□□□□ -1.62
LIMA1-206ENST00000550611 NSD3Q9BZ95 1437 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 TNRC6CQ9HCJ0 1690 aaKnown RBP4.95□□□□□ -1.62
LIMA1-206ENST00000550611 PCDH11XQ9BZA7 1347 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 PCDH11YQ9BZA8 1340 aa4.95□□□□□ -1.62
LIMA1-206ENST00000550611 KIF24Q5T7B8 1368 aa4.94□□□□□ -1.62
LIMA1-206ENST00000550611 ST20-MTHFSA0A0A6YYL1 179 aa4.94□□□□□ -1.62
LIMA1-206ENST00000550611 PRPF40AO75400 957 aaKnown RBP4.94□□□□□ -1.62
LIMA1-206ENST00000550611 PLATP00750 562 aa4.94□□□□□ -1.62
LIMA1-206ENST00000550611 DBHP09172 617 aa4.94□□□□□ -1.62
LIMA1-206ENST00000550611 TMF1P82094 1093 aa4.94□□□□□ -1.62
LIMA1-206ENST00000550611 EAPPQ56P03 285 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-206ENST00000550611 MEI1Q5TIA1 1274 aa4.94□□□□□ -1.62
LIMA1-206ENST00000550611 TMEM52Q8NDY8 209 aa4.94□□□□□ -1.62
LIMA1-206ENST00000550611 DVL3Q92997 716 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-206ENST00000550611 CAPNS2Q96L46 248 aa4.94□□□□□ -1.62
LIMA1-206ENST00000550611 ASAP1Q9ULH1 1129 aa4.94□□□□□ -1.62
LIMA1-206ENST00000550611 FAN1Q9Y2M0 1017 aa4.94□□□□□ -1.62
LIMA1-206ENST00000550611 NCAPD2Q15021 1401 aa4.94□□□□□ -1.62
LIMA1-206ENST00000550611 CUL9Q8IWT3 2517 aa4.93□□□□□ -1.62
LIMA1-206ENST00000550611 NCAM1P13591 858 aa4.93□□□□□ -1.62
LIMA1-206ENST00000550611 GYS1P13807 737 aa4.93□□□□□ -1.62
LIMA1-206ENST00000550611 CRIP3Q6Q6R5 217 aa4.93□□□□□ -1.62
LIMA1-206ENST00000550611 B3GNT8Q7Z7M8 397 aa4.93□□□□□ -1.62
LIMA1-206ENST00000550611 Q8N1X5 172 aa4.93□□□□□ -1.62
LIMA1-206ENST00000550611 LOXL4Q96JB6 756 aa4.93□□□□□ -1.62
LIMA1-206ENST00000550611 TOGARAM1Q9Y4F4 1720 aa4.93□□□□□ -1.62
LIMA1-206ENST00000550611 TONSLQ96HA7 1378 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 CCDC88AQ3V6T2 1871 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 DOT1LQ8TEK3 1739 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 RPS6KA4O75676 772 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 BRD1O95696 1058 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 PF4P02776 101 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 VAV1P15498 845 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 PHKG2P15735 406 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 RAG1P15918 1043 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 CTSKP43235 329 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 TAF1CQ15572 869 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-206ENST00000550611 ARSHQ5FYA8 562 aa4.92□□□□□ -1.62
LIMA1-206ENST00000550611 ZNF761Q86XN6 746 aaPredicted RBP4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms