RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 RNF26Q9BY78 433 aaPredicted RBP9.39□□□□□ -0.91
CLIP1-218ENST00000545889 WDR11Q9BZH6 1224 aa9.39□□□□□ -0.91
CLIP1-218ENST00000545889 DEFB129Q9H1M3 183 aa9.39□□□□□ -0.91
CLIP1-218ENST00000545889 ARFGEF2Q9Y6D5 1785 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 MARK3P27448 753 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 TECP42680 631 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 TYRO3Q06418 890 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 MUM1L1Q5H9M0 696 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 C7orf31Q8N865 590 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 AGBL3Q8NEM8 1001 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 ZDHHC15Q96MV8 337 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 SNX25Q9H3E2 840 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 AK9Q5TCS8 1911 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 SYNJ2BP-COX16A0A087WUM0 186 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 A0A1B0GUA9 196 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 SPDYE2BA6NHP3 402 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 F5H6K3 240 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 SPDYE6P0CI01 402 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 FCER1AP12319 257 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 SCP2P22307 547 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 GUCY1A2P33402 732 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 KLRC3Q07444 240 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 POSTNQ15063 836 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 MTERF2Q49AM1 385 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 BSPRYQ5W0U4 402 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 TTBK2Q6IQ55 1244 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 APOBEC3HQ6NTF7 200 aaKnown RBP9.38□□□□□ -0.91
CLIP1-218ENST00000545889 ZNF449Q6P9G9 518 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 RNF207Q6ZRF8 634 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 STAMQ92783 540 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 COX16Q9P0S2 106 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 MTRF1LQ9UGC7 380 aaKnown RBP9.38□□□□□ -0.91
CLIP1-218ENST00000545889 UBE2Q2LH0YL09 131 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 KIF11P52732 1056 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 FAM83BQ5T0W9 1011 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 CASC4Q6P4E1 433 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 TMTC3Q6ZXV5 915 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 PDZD4Q76G19 769 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-218ENST00000545889 CEP120Q8N960 986 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 SYT17Q9BSW7 474 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 VPS16Q9H269 839 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 ELP3Q9H9T3 547 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 CPSF3Q9UKF6 684 aaKnown RBP9.38□□□□□ -0.91
CLIP1-218ENST00000545889 BTAF1O14981 1849 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 RNASE9P60153 205 aaKnown RBP9.38□□□□□ -0.91
CLIP1-218ENST00000545889 TSTA3Q13630 321 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-218ENST00000545889 CACTINQ8WUQ7 758 aaKnown RBP9.38□□□□□ -0.91
CLIP1-218ENST00000545889 DPF3Q92784 378 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 SLC12A6Q9UHW9 1150 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 GUCA1BQ9UMX6 200 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 CLIC4Q9Y696 253 aa9.38□□□□□ -0.91
CLIP1-218ENST00000545889 BNIP3LO60238 219 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 CUTAO60888 179 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 C6orf163Q5TEZ5 329 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 NAIF1Q69YI7 327 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-218ENST00000545889 SPECC1LQ69YQ0 1117 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 ADALQ6DHV7 355 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 TWF2Q6IBS0 349 aaKnown RBP9.37□□□□□ -0.91
CLIP1-218ENST00000545889 GALNT17Q6IS24 598 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 DSTYKQ6XUX3 929 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 ELMOD1Q8N336 334 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 NLRP4Q96MN2 994 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 FZD1Q9UP38 647 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 FNDC3AQ9Y2H6 1198 aaKnown RBP9.37□□□□□ -0.91
CLIP1-218ENST00000545889 RABGAP1Q9Y3P9 1069 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 VEGFAP15692 232 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-218ENST00000545889 INPP5BP32019 993 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 MXRA7P84157 204 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 ZBTB16Q05516 673 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 STXBP2Q15833 593 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 UAP1Q16222 522 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-218ENST00000545889 SNRNP48Q6IEG0 339 aaKnown RBP9.37□□□□□ -0.91
CLIP1-218ENST00000545889 FAM151AQ8WW52 585 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 CLIC6Q96NY7 704 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 CACYBPQ9HB71 228 aaKnown RBP9.37□□□□□ -0.91
CLIP1-218ENST00000545889 DISC1Q9NRI5 854 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 CTNND2Q9UQB3 1225 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 TOGARAM1Q9Y4F4 1720 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 PPP1R12AO14974 1030 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-218ENST00000545889 OR52Z1P0C646 297 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 ANXA13P27216 316 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 SLC12A2P55011 1212 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 C16orf86Q6ZW13 317 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 SGMS1Q86VZ5 419 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 FBF1Q8TES7 1133 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 MTMR4Q9NYA4 1195 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 CRYBG1Q9Y4K1 1723 aa9.37□□□□□ -0.91
CLIP1-218ENST00000545889 YDJCA8MPS7 323 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 WNT10BO00744 389 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 DDIT3P35638 169 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 SREBF2Q12772 1141 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 ASIC2Q16515 512 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 UBE2SQ16763 222 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 CFAP157Q5JU67 520 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 NOP9Q86U38 636 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 SKA2Q8WVK7 121 aaPredicted RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 ENTPD3O75355 529 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 GMNNO75496 209 aa9.36□□□□□ -0.91
CLIP1-218ENST00000545889 XRCC5P13010 732 aaKnown RBP9.36□□□□□ -0.91
CLIP1-218ENST00000545889 KRT10P13645 584 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms