RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 VPS33BQ9H267 617 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 ZNF277Q9NRM2 450 aaPredicted RBP8.81□□□□□ -1
PDLIM5-221ENST00000542407 COMMD10Q9Y6G5 202 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 FAM196BA6NMK8 535 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 POTEB2H3BUK9 544 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 PSMD14O00487 310 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 FOXN1O15353 648 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 BMP15O95972 392 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 MYCLP1P12525 358 aaPredicted RBP8.81□□□□□ -1
PDLIM5-221ENST00000542407 EIF6P56537 245 aaKnown RBP8.81□□□□□ -1
PDLIM5-221ENST00000542407 ZNF543Q08ER8 600 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 ZNF174Q15697 407 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 ASPRV1Q53RT3 343 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 HEATR3Q7Z4Q2 680 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 SIAH1Q8IUQ4 282 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 VSTM4Q8IW00 320 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 MYOCDQ8IZQ8 938 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 CEP112Q8N8E3 955 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 CCDC47Q96A33 483 aaKnown RBP8.81□□□□□ -1
PDLIM5-221ENST00000542407 PIGSQ96S52 555 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 TDRD3Q9H7E2 651 aaKnown RBP8.81□□□□□ -1
PDLIM5-221ENST00000542407 MRPL44Q9H9J2 332 aaKnown RBP8.81□□□□□ -1
PDLIM5-221ENST00000542407 PI4KBQ9UBF8 816 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 SAMM50Q9Y512 469 aa8.81□□□□□ -1
PDLIM5-221ENST00000542407 FRMPD2Q68DX3 1309 aaPredicted RBP8.8□□□□□ -1
PDLIM5-221ENST00000542407 A0A0U1RQJ8 604 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 SPDYE2BA6NHP3 402 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 ENTPD3O75355 529 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 MMEP08473 750 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 SPDYE6P0CI01 402 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 TGFB3P10600 412 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 JAG1P78504 1218 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 PNOCQ13519 176 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 IGSF22Q8N9C0 903 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 CCDC148Q8NFR7 591 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 CPLX3Q8WVH0 158 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 ATRIPQ8WXE1 791 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 FERMT2Q96AC1 680 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 CCDC17Q96LX7 622 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 CENPHQ9H3R5 247 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 TGFB2P61812 414 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 PTGDRQ13258 359 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 RRP1BQ14684 758 aaKnown RBP8.8□□□□□ -1
PDLIM5-221ENST00000542407 NT5DC1Q5TFE4 455 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 FCHSD1Q86WN1 690 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 C1orf131Q8NDD1 294 aaKnown RBP8.8□□□□□ -1
PDLIM5-221ENST00000542407 BCAS4Q8TDM0 211 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 MTMR8Q96EF0 704 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 RRP36Q96EU6 259 aaKnown RBP8.8□□□□□ -1
PDLIM5-221ENST00000542407 PHACTR1Q9C0D0 580 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 GBP3Q9H0R5 595 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 RSPH9Q9H1X1 276 aaPredicted RBP8.8□□□□□ -1
PDLIM5-221ENST00000542407 CD248Q9HCU0 757 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 CDC23Q9UJX2 597 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 CNTNAP1P78357 1384 aa8.8□□□□□ -1
PDLIM5-221ENST00000542407 ESYT2A0FGR8 921 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 CTAGE15A4D2H0 777 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 MYO1FO00160 1098 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 PPP1R11O60927 126 aaPredicted RBP8.79□□□□□ -1
PDLIM5-221ENST00000542407 RTN2O75298 545 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 CTAGE8P0CG41 777 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 BMP6P22004 513 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 RFX1P22670 979 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 SARSP49591 514 aaKnown RBP8.79□□□□□ -1
PDLIM5-221ENST00000542407 CTAGE6Q86UF2 777 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 TMEM139Q8IV31 216 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 CTAGE4Q8IX94 777 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 SPATA20Q8TB22 786 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 N4BP2L2Q92802 583 aaPredicted RBP8.79□□□□□ -1
PDLIM5-221ENST00000542407 KCNN1Q92952 543 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 EPSTI1Q96J88 318 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 SERTAD1Q9UHV2 236 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 FBXO9Q9UK97 447 aaPredicted RBP8.79□□□□□ -1
PDLIM5-221ENST00000542407 RAB21Q9UL25 225 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 FRMD3A2A2Y4 597 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 SOWAHDA6NJG2 315 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 hCG_1984214I3L0E3 225 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 POLR2DO15514 142 aaKnown RBP8.79□□□□□ -1
PDLIM5-221ENST00000542407 RAD17O75943 681 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 ZBTB7AO95365 584 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 MYL5Q02045 173 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 SFSWAPQ12872 951 aaKnown RBP8.79□□□□□ -1
PDLIM5-221ENST00000542407 SH3RF1Q7Z6J0 888 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 C11orf96Q7Z7L8 435 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 ZNF713Q8N859 430 aaPredicted RBP8.79□□□□□ -1
PDLIM5-221ENST00000542407 SYMPKQ92797 1274 aaKnown RBP8.79□□□□□ -1
PDLIM5-221ENST00000542407 EZH1Q92800 747 aaPredicted RBP8.79□□□□□ -1
PDLIM5-221ENST00000542407 BHMTQ93088 406 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 ZBED3Q96IU2 234 aaPredicted RBP8.79□□□□□ -1
PDLIM5-221ENST00000542407 JMJD4Q9H9V9 463 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 A1CFQ9NQ94 594 aaKnown RBP8.79□□□□□ -1
PDLIM5-221ENST00000542407 NYAP2Q9P242 653 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 MCM7P33993 719 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 NF2P35240 595 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 GCKP35557 465 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 DEUP1Q05D60 604 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 CERKLQ49MI3 558 aaPredicted RBP8.79□□□□□ -1
PDLIM5-221ENST00000542407 MYO1HQ8N1T3 1032 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 LARGE2Q8N3Y3 721 aa8.79□□□□□ -1
PDLIM5-221ENST00000542407 MTRQ99707 1265 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms