RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 RSPH10BP0C881 870 aa13.69□□□□□ -0.22
AP003559.1-201ENST00000540906 BCRP11274 1271 aa13.69□□□□□ -0.22
AP003559.1-201ENST00000540906 CDK11BP21127 795 aaKnown RBP13.69□□□□□ -0.22
AP003559.1-201ENST00000540906 CNTN2Q02246 1040 aa13.69□□□□□ -0.22
AP003559.1-201ENST00000540906 NIPA1Q7RTP0 329 aa13.69□□□□□ -0.22
AP003559.1-201ENST00000540906 VSTM4Q8IW00 320 aa13.69□□□□□ -0.22
AP003559.1-201ENST00000540906 PROCA1Q8NCQ7 364 aaPredicted RBP13.69□□□□□ -0.22
AP003559.1-201ENST00000540906 TEKT3Q9BXF9 490 aa13.69□□□□□ -0.22
AP003559.1-201ENST00000540906 ACAD9Q9H845 621 aa13.69□□□□□ -0.22
AP003559.1-201ENST00000540906 GPBP1L1Q9HC44 474 aaPredicted RBP13.69□□□□□ -0.22
AP003559.1-201ENST00000540906 A0A1B0GTH6 734 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 GOLGA6L6A8MZA4 724 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 NR3C2P08235 984 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 MTMR1Q13613 665 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 GIT2Q14161 759 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 NR1I3Q14994 352 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 KRT31Q15323 416 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 PNMA8AQ86V59 439 aaPredicted RBP13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 VSIG10LQ86VR7 867 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 TPH2Q8IWU9 490 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 SAMD3Q8N6K7 520 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 SYT2Q8N9I0 419 aaPredicted RBP13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 BANK1Q8NDB2 785 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 P2RX5Q93086 422 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 PAGR1Q9BTK6 254 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 BHMT2Q9H2M3 363 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 PANK4Q9NVE7 773 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 PNMA2Q9UL42 364 aa13.68□□□□□ -0.22
AP003559.1-201ENST00000540906 FRMD3A2A2Y4 597 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 CCNE2O96020 404 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 CCNE1P24864 410 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 MSNP26038 577 aaKnown RBP13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 ARMC9Q7Z3E5 817 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 DHTKD1Q96HY7 919 aaPredicted RBP13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 RIT2Q99578 217 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 TUFT1Q9NNX1 390 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 TAB2Q9NYJ8 693 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 ADD3Q9UEY8 706 aaKnown RBP13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 AGTPBP1Q9UPW5 1226 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 DNM3Q9UQ16 869 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 RABGAP1Q9Y3P9 1069 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 TESPA1A2RU30 521 aaPredicted RBP13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 KCNJ18B7U540 433 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 EYA4O95677 639 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 HERVK_113P62684 666 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 CCZ1BP86790 482 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 CCZ1P86791 482 aaPredicted RBP13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 MKRN3Q13064 507 aaKnown RBP13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 KCNJ12Q14500 433 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 EPHA7Q15375 998 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 UGCGQ16739 394 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 TPD52L1Q16890 204 aaPredicted RBP13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 Q3C1V9 767 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 COBLL1Q53SF7 1204 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 LRRC8AQ8IWT6 810 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 REEP2Q9BRK0 252 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 SRRTQ9BXP5 876 aaKnown RBP13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 SPATC1LQ9H0A9 340 aa13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 LIMA1Q9UHB6 759 aaKnown RBP13.67□□□□□ -0.22
AP003559.1-201ENST00000540906 PSMA7O14818 248 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 CBFA2T2O43439 604 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 ZNF500O60304 480 aaPredicted RBP13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 SORBS3O60504 671 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 CCND2P30279 289 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 CLCN1P35523 988 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 CASP5P51878 434 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 IRX3P78415 501 aaPredicted RBP13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 TCP11X2Q5H9J9 407 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 CENPPQ6IPU0 288 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 MIER3Q7Z3K6 550 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 RIOX2Q8IUF8 465 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 CCDC47Q96A33 483 aaKnown RBP13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 TRIM47Q96LD4 638 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 LXNQ9BS40 222 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 MOV10L1Q9BXT6 1211 aaKnown RBP13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 RBPJLQ9UBG7 517 aa13.66□□□□□ -0.22
AP003559.1-201ENST00000540906 LRRC37A2A6NM11 1700 aa13.65□□□□□ -0.22
AP003559.1-201ENST00000540906 TMEM150BA6NC51 233 aa13.65□□□□□ -0.22
AP003559.1-201ENST00000540906 PBX1P40424 430 aa13.65□□□□□ -0.22
AP003559.1-201ENST00000540906 COPB1P53618 953 aaKnown RBP13.65□□□□□ -0.22
AP003559.1-201ENST00000540906 TBX2Q13207 712 aaPredicted RBP13.65□□□□□ -0.22
AP003559.1-201ENST00000540906 FAM26FQ5R3K3 315 aa13.65□□□□□ -0.22
AP003559.1-201ENST00000540906 CEP135Q66GS9 1140 aa13.65□□□□□ -0.22
AP003559.1-201ENST00000540906 RINT1Q6NUQ1 792 aa13.65□□□□□ -0.22
AP003559.1-201ENST00000540906 KIAA1524Q8TCG1 905 aa13.65□□□□□ -0.22
AP003559.1-201ENST00000540906 INPP4AQ96PE3 977 aaPredicted RBP13.65□□□□□ -0.22
AP003559.1-201ENST00000540906 VPS16Q9H269 839 aa13.65□□□□□ -0.22
AP003559.1-201ENST00000540906 SOWAHBA6NEL2 793 aa13.64□□□□□ -0.23
AP003559.1-201ENST00000540906 TPM3P06753 285 aa13.64□□□□□ -0.23
AP003559.1-201ENST00000540906 STIM1Q13586 685 aa13.64□□□□□ -0.23
AP003559.1-201ENST00000540906 HERC4Q5GLZ8 1057 aaPredicted RBP13.64□□□□□ -0.23
AP003559.1-201ENST00000540906 C1orf186Q6ZWK4 172 aa13.64□□□□□ -0.23
AP003559.1-201ENST00000540906 NCAPG2Q86XI2 1143 aa13.64□□□□□ -0.23
AP003559.1-201ENST00000540906 SFR1Q86XK3 245 aa13.64□□□□□ -0.23
AP003559.1-201ENST00000540906 CREBRFQ8IUR6 639 aa13.64□□□□□ -0.23
AP003559.1-201ENST00000540906 GUF1Q8N442 669 aaKnown RBP13.64□□□□□ -0.23
AP003559.1-201ENST00000540906 CHST13Q8NET6 341 aa13.64□□□□□ -0.23
AP003559.1-201ENST00000540906 NSUN6Q8TEA1 469 aaKnown RBP13.64□□□□□ -0.23
AP003559.1-201ENST00000540906 LRRC27Q9C0I9 530 aa13.64□□□□□ -0.23
AP003559.1-201ENST00000540906 ZHX3Q9H4I2 956 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms