RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TMEM150BA6NC51 233 aa18.69■□□□□ 0.58
USP28-208ENST00000540438 MSH4O15457 936 aa18.69■□□□□ 0.58
USP28-208ENST00000540438 BMP3P12645 472 aa18.69■□□□□ 0.58
USP28-208ENST00000540438 NMT1P30419 496 aaKnown RBP18.69■□□□□ 0.58
USP28-208ENST00000540438 BEND6Q5SZJ8 279 aaPredicted RBP18.69■□□□□ 0.58
USP28-208ENST00000540438 MTMR8Q96EF0 704 aa18.69■□□□□ 0.58
USP28-208ENST00000540438 AMNQ9BXJ7 453 aa18.69■□□□□ 0.58
USP28-208ENST00000540438 PRR12Q9ULL5 1215 aa18.69■□□□□ 0.58
USP28-208ENST00000540438 ATF5Q9Y2D1 282 aaPredicted RBP18.69■□□□□ 0.58
USP28-208ENST00000540438 TMCO5BA8MYB1 307 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 TLR2O60603 784 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 FECHP22830 423 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 KRT83P78385 493 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 PDIA5Q14554 519 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 SYDE2Q5VT97 1194 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 PPP4R3AQ6IN85 833 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 CERS3Q8IU89 383 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 AKT1S1Q96B36 256 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 PURBQ96QR8 312 aaKnown RBP18.68■□□□□ 0.58
USP28-208ENST00000540438 GTPBP4Q9BZE4 634 aaKnown RBP18.68■□□□□ 0.58
USP28-208ENST00000540438 FAM53CQ9NYF3 392 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 COL4A3BPQ9Y5P4 624 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 THSD7AQ9UPZ6 1657 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 GCNT3O95395 438 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 LY75O60449 1722 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 ESYT3A0FGR9 886 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 MYL1P05976 194 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 LMAN1P49257 510 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 TRAPPC11Q7Z392 1133 aa18.68■□□□□ 0.58
USP28-208ENST00000540438 ZSCAN5CA6NGD5 496 aaPredicted RBP18.67■□□□□ 0.58
USP28-208ENST00000540438 SPATA31C1P0DKV0 1188 aa18.67■□□□□ 0.58
USP28-208ENST00000540438 FKBP3Q00688 224 aaKnown RBP18.67■□□□□ 0.58
USP28-208ENST00000540438 MEA1Q16626 185 aa18.67■□□□□ 0.58
USP28-208ENST00000540438 PRAMEF18Q5VWM3 479 aa18.67■□□□□ 0.58
USP28-208ENST00000540438 ERGIC2Q96RQ1 377 aa18.67■□□□□ 0.58
USP28-208ENST00000540438 DHX36Q9H2U1 1008 aaKnown RBP18.67■□□□□ 0.58
USP28-208ENST00000540438 HYOU1Q9Y4L1 999 aa18.67■□□□□ 0.58
USP28-208ENST00000540438 PVALEFA0A1B0GWK0 134 aa18.67■□□□□ 0.58
USP28-208ENST00000540438 ZBTB22O15209 634 aa18.67■□□□□ 0.58
USP28-208ENST00000540438 LRRN2O75325 713 aa18.67■□□□□ 0.58
USP28-208ENST00000540438 STRIP1Q5VSL9 837 aa18.67■□□□□ 0.58
USP28-208ENST00000540438 FAN1Q9Y2M0 1017 aa18.67■□□□□ 0.58
USP28-208ENST00000540438 TISP43B9A030 160 aa18.66■□□□□ 0.58
USP28-208ENST00000540438 NOL4O94818 638 aa18.66■□□□□ 0.58
USP28-208ENST00000540438 CCDC65Q8IXS2 484 aa18.66■□□□□ 0.58
USP28-208ENST00000540438 BAP1Q92560 729 aa18.66■□□□□ 0.58
USP28-208ENST00000540438 DMGDHQ9UI17 866 aaKnown RBP18.66■□□□□ 0.58
USP28-208ENST00000540438 PLAGL2Q9UPG8 496 aa18.66■□□□□ 0.58
USP28-208ENST00000540438 SMARCA1P28370 1054 aa18.66■□□□□ 0.58
USP28-208ENST00000540438 KCNH2Q12809 1159 aa18.66■□□□□ 0.58
USP28-208ENST00000540438 LENG9Q96B70 501 aa18.66■□□□□ 0.58
USP28-208ENST00000540438 DYDC2Q96IM9 177 aa18.66■□□□□ 0.58
USP28-208ENST00000540438 CHORDC1Q9UHD1 332 aaPredicted RBP18.66■□□□□ 0.58
USP28-208ENST00000540438 AJAP1Q9UKB5 411 aaPredicted RBP18.66■□□□□ 0.58
USP28-208ENST00000540438 MYH4Q9Y623 1939 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 A0A087X0T9 212 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 PSMD14O00487 310 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 FAM228BP0C875 321 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 HOXD13P35453 343 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 VAV2P52735 878 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 CASP8Q14790 479 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 DNAJC21Q5F1R6 531 aaKnown RBP18.65■□□□□ 0.58
USP28-208ENST00000540438 BANK1Q8NDB2 785 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 FAM84AQ96KN4 292 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 CCDC17Q96LX7 622 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 LRRC1Q9BTT6 524 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 WDR18Q9BV38 432 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 DNM3Q9UQ16 869 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 EIF3CLB5ME19 914 aaKnown RBP18.65■□□□□ 0.58
USP28-208ENST00000540438 EGFRP00533 1210 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 GIT2Q14161 759 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 TMEM179Q6ZVK1 233 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 LARGE2Q8N3Y3 721 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 AGBL1Q96MI9 1066 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 EIF3CQ99613 913 aaKnown RBP18.65■□□□□ 0.58
USP28-208ENST00000540438 NUP58Q9BVL2 599 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 MAGEF1Q9HAY2 307 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 KCNMB3Q9NPA1 279 aa18.65■□□□□ 0.58
USP28-208ENST00000540438 WRAP73Q9P2S5 460 aaPredicted RBP18.65■□□□□ 0.58
USP28-208ENST00000540438 CCDC151A5D8V7 595 aa18.64■□□□□ 0.57
USP28-208ENST00000540438 ANKRD65E5RJM6 399 aa18.64■□□□□ 0.57
USP28-208ENST00000540438 TRADDQ15628 312 aa18.64■□□□□ 0.57
USP28-208ENST00000540438 ETNPPLQ8TBG4 499 aa18.64■□□□□ 0.57
USP28-208ENST00000540438 ARP10275 920 aa18.64■□□□□ 0.57
USP28-208ENST00000540438 CYP2J2P51589 502 aa18.64■□□□□ 0.57
USP28-208ENST00000540438 SLC12A3P55017 1021 aa18.64■□□□□ 0.57
USP28-208ENST00000540438 GABPB1Q06547 395 aaPredicted RBP18.64■□□□□ 0.57
USP28-208ENST00000540438 SPIRE1Q08AE8 756 aa18.64■□□□□ 0.57
USP28-208ENST00000540438 WHAMMP3Q1A5X7 153 aa18.64■□□□□ 0.57
USP28-208ENST00000540438 NBPF9Q3BBW0 867 aa18.64■□□□□ 0.57
USP28-208ENST00000540438 MYCT1Q8N699 235 aa18.64■□□□□ 0.57
USP28-208ENST00000540438 EIF2AK1Q9BQI3 630 aaKnown RBP18.64■□□□□ 0.57
USP28-208ENST00000540438 ABCB11O95342 1321 aa18.64■□□□□ 0.57
USP28-208ENST00000540438 AKAP3O75969 853 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 EHHADHQ08426 723 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 TTC19Q6DKK2 380 aaPredicted RBP18.63■□□□□ 0.57
USP28-208ENST00000540438 PCDHA2Q9Y5H9 948 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 ANKRD31Q8N7Z5 1873 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 SLX4Q8IY92 1834 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 KLRC1P26715 233 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms