RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 CCDC65Q8IXS2 484 aa10.71□□□□□ -0.69
CLIP1-212ENST00000540304 CLEC4DQ8WXI8 215 aa10.71□□□□□ -0.69
CLIP1-212ENST00000540304 SLC5A5Q92911 643 aa10.71□□□□□ -0.69
CLIP1-212ENST00000540304 POLR3CQ9BUI4 534 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-212ENST00000540304 PICK1Q9NRD5 415 aa10.71□□□□□ -0.69
CLIP1-212ENST00000540304 GGA3Q9NZ52 723 aa10.71□□□□□ -0.69
CLIP1-212ENST00000540304 PPP1R9AQ9ULJ8 1098 aa10.71□□□□□ -0.69
CLIP1-212ENST00000540304 SUFUQ9UMX1 484 aa10.71□□□□□ -0.69
CLIP1-212ENST00000540304 DNM3Q9UQ16 869 aa10.71□□□□□ -0.69
CLIP1-212ENST00000540304 PHIPQ8WWQ0 1821 aa10.71□□□□□ -0.69
CLIP1-212ENST00000540304 PITPNM2Q9BZ72 1349 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 KIF2AO00139 706 aaPredicted RBP10.71□□□□□ -0.7
CLIP1-212ENST00000540304 MFAP3LO75121 409 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 CYP11B2P19099 503 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 BACE1P56817 501 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 UBXN2AP68543 259 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 UBXN1Q04323 297 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 LRRC63Q05C16 580 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 SPP2Q13103 211 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 ZKSCAN8Q15776 578 aaPredicted RBP10.71□□□□□ -0.7
CLIP1-212ENST00000540304 LRCH2Q5VUJ6 765 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 CEP135Q66GS9 1140 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 FOXR2Q6PJQ5 311 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 CNGA4Q8IV77 575 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 KCTD17Q8N5Z5 321 aa10.71□□□□□ -0.7
CLIP1-212ENST00000540304 RPAP3Q9H6T3 665 aaPredicted RBP10.71□□□□□ -0.7
CLIP1-212ENST00000540304 RPTORQ8N122 1335 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 NFIBO00712 420 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 PSMD10O75832 226 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 GYPCP04921 128 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 FDX1P10109 184 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 PTPRAP18433 802 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 RAD51AP2Q09MP3 1159 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 PPP2R5CQ13362 524 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 FAM26FQ5R3K3 315 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 OTOP1Q7RTM1 612 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 MYOCDQ8IZQ8 938 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 CPXCR1Q8N123 301 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 SAMD3Q8N6K7 520 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 ZNF280CQ8ND82 737 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 ZKSCAN4Q969J2 545 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-212ENST00000540304 CCDC51Q96ER9 411 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 CNOT6LQ96LI5 555 aaKnown RBP10.7□□□□□ -0.7
CLIP1-212ENST00000540304 EIF2AK1Q9BQI3 630 aaKnown RBP10.7□□□□□ -0.7
CLIP1-212ENST00000540304 SPON1Q9HCB6 807 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 RAVER2Q9HCJ3 691 aaKnown RBP10.7□□□□□ -0.7
CLIP1-212ENST00000540304 A0A1W2PQC6 194 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 FRMD3A2A2Y4 597 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 EML1O00423 815 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 MEIS1O00470 390 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 ZBED4O75132 1171 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 FGFR1OPO95684 399 aaKnown RBP10.7□□□□□ -0.7
CLIP1-212ENST00000540304 KRT18P05783 430 aaKnown RBP10.7□□□□□ -0.7
CLIP1-212ENST00000540304 ALAS1P13196 640 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 PRAMEF18Q5VWM3 479 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 KRT26Q7Z3Y9 468 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 MB21D1Q8N884 522 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 SYT2Q8N9I0 419 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-212ENST00000540304 CPLX3Q8WVH0 158 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 TSG101Q99816 390 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 TUBGCP2Q9BSJ2 902 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 NAA15Q9BXJ9 866 aaKnown RBP10.7□□□□□ -0.7
CLIP1-212ENST00000540304 MAP3K20Q9NYL2 800 aaKnown RBP10.7□□□□□ -0.7
CLIP1-212ENST00000540304 CTDP1Q9Y5B0 961 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-212ENST00000540304 PAXBP1Q9Y5B6 917 aa10.7□□□□□ -0.7
CLIP1-212ENST00000540304 SSC5DA1L4H1 1573 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 ZSCAN12O43309 604 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 GAS7O60861 476 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 CASP14P31944 242 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 EPS15P42566 896 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 DNM2P50570 870 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 PSMC6P62333 389 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 CYP4A11Q02928 519 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 PABPC4Q13310 644 aaKnown RBP eCLIP10.69□□□□□ -0.7
CLIP1-212ENST00000540304 TERF2Q15554 542 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 ZC3H12AQ5D1E8 599 aaKnown RBP10.69□□□□□ -0.7
CLIP1-212ENST00000540304 SLC30A10Q6XR72 485 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 ZNF507Q8TCN5 953 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 MXRA8Q9BRK3 442 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 ZNF577Q9BSK1 485 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 WDR11Q9BZH6 1224 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 TUFT1Q9NNX1 390 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 COL20A1Q9P218 1284 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 COL11A1P12107 1806 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-212ENST00000540304 NPHP3-ACAD11A0A0J9YXS1 232 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 MTIF2P46199 727 aaKnown RBP10.69□□□□□ -0.7
CLIP1-212ENST00000540304 FXR1P51114 621 aaKnown RBP eCLIP10.69□□□□□ -0.7
CLIP1-212ENST00000540304 HIRAP54198 1017 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-212ENST00000540304 LRRC41Q15345 812 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 ARSHQ5FYA8 562 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 KLRG1Q96E93 195 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 C12orf42Q96LP6 360 aa10.69□□□□□ -0.7
CLIP1-212ENST00000540304 RLFQ13129 1914 aa10.68□□□□□ -0.7
CLIP1-212ENST00000540304 B4DLN1 442 aa10.68□□□□□ -0.7
CLIP1-212ENST00000540304 C19orf81C9J6K1 198 aa10.68□□□□□ -0.7
CLIP1-212ENST00000540304 PES1O00541 588 aaKnown RBP10.68□□□□□ -0.7
CLIP1-212ENST00000540304 EYA4O95677 639 aa10.68□□□□□ -0.7
CLIP1-212ENST00000540304 TUBB4AP04350 444 aa10.68□□□□□ -0.7
CLIP1-212ENST00000540304 ARP10275 920 aa10.68□□□□□ -0.7
CLIP1-212ENST00000540304 BCRP11274 1271 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms