RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 SNX25Q9H3E2 840 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 SCHIP1Q9P0W5 487 aaPredicted RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 PKP1Q13835 747 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 SPOPLQ6IQ16 392 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 FBXL13Q8NEE6 735 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 PARD3BQ8TEW8 1205 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 ATP6V0A1Q93050 837 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 EAF2Q96CJ1 260 aaPredicted RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 CFAP36Q96G28 342 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 APOL6Q9BWW8 343 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 TBK1Q9UHD2 729 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 CARMIL3Q8ND23 1372 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 ZNF233A6NK53 670 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 NCF2P19878 526 aaPredicted RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 TMED10P49755 219 aaKnown RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 ZC3H18Q86VM9 953 aaKnown RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 METTL23Q86XA0 190 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 NUDCD1Q96RS6 583 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 ZNF577Q9BSK1 485 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 BEGAINQ9BUH8 593 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 KMT5AQ9NQR1 393 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 POLR3EQ9NVU0 708 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 ERVV-2B6SEH9 535 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 PDHA1P08559 390 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 EIF3BP55884 814 aaKnown RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 DYNLT1P63172 113 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 CCDC15Q0P6D6 951 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 ASPRV1Q53RT3 343 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 DNAJC24Q6P3W2 148 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 RSRC2Q7L4I2 434 aaKnown RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 RYBPQ8N488 228 aaPredicted RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 ZBTB38Q8NAP3 1195 aaPredicted RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 EEF2KMTQ96G04 330 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 UBN1Q9NPG3 1134 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 SLC12A6Q9UHW9 1150 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 MAN1B1Q9UKM7 699 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 EXOC1LA0A1B0GW35 172 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 RASGRF2O14827 1237 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 FTCDO95954 541 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 ESRRAP11474 423 aaPredicted RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 ABCD1P33897 745 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 SLCO1A2P46721 670 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 PCGF5Q86SE9 256 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 FAM133AQ8N9E0 248 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 FAM149B1Q96BN6 582 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 TMEM206Q9H813 350 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 FGFR1OP2Q9NVK5 253 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 SUCLA2Q9P2R7 463 aaPredicted RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 NOVA2Q9UNW9 492 aaKnown RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 GOLGA8SH3BPF8 625 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 SERPING1P05155 500 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 CXCR5P32302 372 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 CASP8Q14790 479 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.71□□□□□ -0.69
COL4A6-208ENST00000538570 NEK9Q8TD19 979 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 DYDC2Q96IM9 177 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 AMNQ9BXJ7 453 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 RNF26Q9BY78 433 aaPredicted RBP10.71□□□□□ -0.69
COL4A6-208ENST00000538570 RWDD2AQ9UIY3 292 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 ADAM21Q9UKJ8 722 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 LRRN2O75325 713 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 MYL1P05976 194 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 PLS3P13797 630 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 ABCB5Q2M3G0 1257 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 TRAIPQ9BWF2 469 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 NHEJ1Q9H9Q4 299 aaPredicted RBP10.71□□□□□ -0.69
COL4A6-208ENST00000538570 CPSF3Q9UKF6 684 aaKnown RBP10.71□□□□□ -0.69
COL4A6-208ENST00000538570 NR1D1P20393 614 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 UBE3CQ15386 1083 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 DPCR1Q3MIW9 517 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 KIF9Q9HAQ2 790 aa10.71□□□□□ -0.69
COL4A6-208ENST00000538570 MAGED2Q9UNF1 606 aaPredicted RBP10.71□□□□□ -0.69
COL4A6-208ENST00000538570 ZBBXA8MT70 800 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 MAPK13O15264 365 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 GFPT2O94808 682 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 SCNN1DP51172 638 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 SPDYE1Q8NFV5 336 aaPredicted RBP10.71□□□□□ -0.7
COL4A6-208ENST00000538570 COQ7Q99807 217 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 FAM167BQ9BTA0 163 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 LSG1Q9H089 658 aaKnown RBP10.71□□□□□ -0.7
COL4A6-208ENST00000538570 USP44Q9H0E7 712 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 UPF3AQ9H1J1 476 aaKnown RBP10.71□□□□□ -0.7
COL4A6-208ENST00000538570 GCNT4Q9P109 453 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 IQANK1A0A1B0GTG1 560 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 SEPT2Q15019 361 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 C6orf118Q5T5N4 469 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 MIS18BP1Q6P0N0 1132 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 SLC30A9Q6PML9 568 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 GIPC2Q8TF65 315 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 ORAI2Q96SN7 254 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 POLR3CQ9BUI4 534 aaPredicted RBP10.71□□□□□ -0.7
COL4A6-208ENST00000538570 ZMYND12Q9H0C1 365 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 THAP9Q9H5L6 903 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 INTUQ9ULD6 942 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 AKT3Q9Y243 479 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 PCDHA13Q9Y5I0 950 aa10.71□□□□□ -0.7
COL4A6-208ENST00000538570 CFLARO15519 480 aa10.7□□□□□ -0.7
COL4A6-208ENST00000538570 FKBP3Q00688 224 aaKnown RBP10.7□□□□□ -0.7
COL4A6-208ENST00000538570 DR1Q01658 176 aa10.7□□□□□ -0.7
COL4A6-208ENST00000538570 GPATCH4Q5T3I0 446 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms