RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 GHRHRQ02643 423 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 PWP2Q15269 919 aaKnown RBP13.47□□□□□ -0.25
CLIP1-208ENST00000537004 LY6KQ17RY6 165 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 SPECC1Q5M775 1068 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 WWC2Q6AWC2 1192 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 PIK3AP1Q6ZUJ8 805 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 BLIDQ8IZY5 108 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 PCSK9Q8NBP7 692 aaKnown RBP13.47□□□□□ -0.25
CLIP1-208ENST00000537004 PPP1R13LQ8WUF5 828 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 GLT1D1Q96MS3 346 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 PDCD2LQ9BRP1 358 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 TRIM43BA6NCK2 446 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 RGS20O76081 388 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 ITGB8P26012 769 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 IQCB1Q15051 598 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 ZRSR1Q15695 479 aaKnown RBP13.46□□□□□ -0.25
CLIP1-208ENST00000537004 STXBP2Q15833 593 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 TTC38Q5R3I4 469 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 TYW1BQ6NUM6 668 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 HEATR3Q7Z4Q2 680 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 CEP57L1Q8IYX8 460 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 CCDC148Q8NFR7 591 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 SCFD2Q8WU76 684 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 TRIM43Q96BQ3 446 aaPredicted RBP13.46□□□□□ -0.25
CLIP1-208ENST00000537004 PDLIM7Q9NR12 457 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 BARHL2Q9NY43 387 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 FAM13BQ9NYF5 915 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 PCDHA4Q9UN74 947 aa13.46□□□□□ -0.25
CLIP1-208ENST00000537004 STXBP3O00186 592 aa13.46□□□□□ -0.26
CLIP1-208ENST00000537004 SORBS3O60504 671 aa13.46□□□□□ -0.26
CLIP1-208ENST00000537004 SMARCA1P28370 1054 aa13.46□□□□□ -0.26
CLIP1-208ENST00000537004 TRAPPC10P48553 1259 aa13.46□□□□□ -0.26
CLIP1-208ENST00000537004 PSMC6P62333 389 aa13.46□□□□□ -0.26
CLIP1-208ENST00000537004 NKX3-2P78367 333 aa13.46□□□□□ -0.26
CLIP1-208ENST00000537004 LONRF3Q496Y0 759 aa13.46□□□□□ -0.26
CLIP1-208ENST00000537004 C1orf53Q5VUE5 145 aa13.46□□□□□ -0.26
CLIP1-208ENST00000537004 CCDC62Q6P9F0 684 aa13.46□□□□□ -0.26
CLIP1-208ENST00000537004 KRBA2Q6ZNG9 492 aa13.46□□□□□ -0.26
CLIP1-208ENST00000537004 FAM177A1Q8N128 213 aaPredicted RBP13.46□□□□□ -0.26
CLIP1-208ENST00000537004 OR6J1Q8NGC5 347 aa13.46□□□□□ -0.26
CLIP1-208ENST00000537004 IWS1Q96ST2 819 aa13.46□□□□□ -0.26
CLIP1-208ENST00000537004 MPHOSPH6Q99547 160 aaKnown RBP13.46□□□□□ -0.26
CLIP1-208ENST00000537004 LRRC37A2A6NM11 1700 aa13.45□□□□□ -0.26
CLIP1-208ENST00000537004 EYSQ5T1H1 3165 aa13.45□□□□□ -0.26
CLIP1-208ENST00000537004 GRIN2DO15399 1336 aa13.45□□□□□ -0.26
CLIP1-208ENST00000537004 A0A0C4DFX4 3053 aa13.45□□□□□ -0.26
CLIP1-208ENST00000537004 MEIS2O14770 477 aa13.45□□□□□ -0.26
CLIP1-208ENST00000537004 PGM5Q15124 567 aa13.45□□□□□ -0.26
CLIP1-208ENST00000537004 ZNF174Q15697 407 aa13.45□□□□□ -0.26
CLIP1-208ENST00000537004 NAT10Q9H0A0 1025 aaKnown RBP13.45□□□□□ -0.26
CLIP1-208ENST00000537004 CSRNP2Q9H175 543 aa13.45□□□□□ -0.26
CLIP1-208ENST00000537004 B4DLN1 442 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 GOLGA6L19H0YKK7 550 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 EIF3JO75822 258 aaKnown RBP13.44□□□□□ -0.26
CLIP1-208ENST00000537004 MRPL12P52815 198 aaKnown RBP13.44□□□□□ -0.26
CLIP1-208ENST00000537004 FAAP100Q0VG06 881 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 TTLL4Q14679 1199 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 DPCR1Q3MIW9 517 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 GALNT17Q6IS24 598 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 VSIG10LQ86VR7 867 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 DAGLBQ8NCG7 672 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 CNNM3Q8NE01 707 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 MAF1Q9H063 256 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 Q9Y3F1 56 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 MYH7BA7E2Y1 1941 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 M0R2N6 131 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 BIN1O00499 593 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 MSNP26038 577 aaKnown RBP13.44□□□□□ -0.26
CLIP1-208ENST00000537004 CLCN1P35523 988 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 FXR1P51114 621 aaKnown RBP eCLIP13.44□□□□□ -0.26
CLIP1-208ENST00000537004 ATP2C1P98194 919 aaPredicted RBP13.44□□□□□ -0.26
CLIP1-208ENST00000537004 TRAF1Q13077 416 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 PTGDRQ13258 359 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 PNOCQ13519 176 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 UBE2SQ16763 222 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 DHX40Q8IX18 779 aaKnown RBP13.44□□□□□ -0.26
CLIP1-208ENST00000537004 BCAS3Q9H6U6 928 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 MAP3K20Q9NYL2 800 aaKnown RBP13.44□□□□□ -0.26
CLIP1-208ENST00000537004 PRKAG2Q9UGJ0 569 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 TUBE1Q9UJT0 475 aa13.44□□□□□ -0.26
CLIP1-208ENST00000537004 BECN2A8MW95 431 aa13.43□□□□□ -0.26
CLIP1-208ENST00000537004 POLR2DO15514 142 aaKnown RBP13.43□□□□□ -0.26
CLIP1-208ENST00000537004 MYL3P08590 195 aa13.43□□□□□ -0.26
CLIP1-208ENST00000537004 CLTBP09497 229 aa13.43□□□□□ -0.26
CLIP1-208ENST00000537004 CDK7P50613 346 aa13.43□□□□□ -0.26
CLIP1-208ENST00000537004 NLRP12P59046 1061 aa13.43□□□□□ -0.26
CLIP1-208ENST00000537004 MRPS9P82933 396 aaKnown RBP13.43□□□□□ -0.26
CLIP1-208ENST00000537004 SP2Q02086 613 aa13.43□□□□□ -0.26
CLIP1-208ENST00000537004 USP49Q70CQ1 688 aa13.43□□□□□ -0.26
CLIP1-208ENST00000537004 ANKRD33Q7Z3H0 272 aa13.43□□□□□ -0.26
CLIP1-208ENST00000537004 ELOA2Q8IYF1 753 aaPredicted RBP13.43□□□□□ -0.26
CLIP1-208ENST00000537004 RASGRP4Q8TDF6 673 aa13.43□□□□□ -0.26
CLIP1-208ENST00000537004 CCDC12Q8WUD4 166 aaPredicted RBP13.43□□□□□ -0.26
CLIP1-208ENST00000537004 AFG1LQ8WV93 481 aa13.43□□□□□ -0.26
CLIP1-208ENST00000537004 BADQ92934 168 aa13.43□□□□□ -0.26
CLIP1-208ENST00000537004 UBE2OQ9C0C9 1292 aaKnown RBP13.43□□□□□ -0.26
CLIP1-208ENST00000537004 PSTPIP2Q9H939 334 aa13.43□□□□□ -0.26
CLIP1-208ENST00000537004 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.43□□□□□ -0.26
CLIP1-208ENST00000537004 DDX41Q9UJV9 622 aaKnown RBP13.43□□□□□ -0.26
CLIP1-208ENST00000537004 ZKSCAN5Q9Y2L8 839 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms