RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 SENP7Q9BQF6 1050 aa5.8□□□□□ -1.48
USH1C-210ENST00000534556 AGO4Q9HCK5 861 aaKnown RBP5.8□□□□□ -1.48
USH1C-210ENST00000534556 IL23AQ9NPF7 189 aa5.8□□□□□ -1.48
USH1C-210ENST00000534556 KCNH7Q9NS40 1196 aa5.8□□□□□ -1.48
USH1C-210ENST00000534556 KCNJ14Q9UNX9 436 aa5.8□□□□□ -1.48
USH1C-210ENST00000534556 MYH11P35749 1972 aa5.8□□□□□ -1.48
USH1C-210ENST00000534556 ZBTB42B2RXF5 422 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 H3BRB1 525 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 TLR3O15455 904 aaKnown RBP5.79□□□□□ -1.48
USH1C-210ENST00000534556 ZEB2O60315 1214 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 KPNA6O60684 536 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 LGR5O75473 907 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 STAM2O75886 525 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 ATG7O95352 703 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 CYP3A4P08684 503 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 IQCF3P0C7M6 154 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 SMIM10L2AP0DMW4 78 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 SMIM10L2BP0DMW5 78 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 CKBP12277 381 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 MYOGP15173 224 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 TCF7P36402 384 aaPredicted RBP5.79□□□□□ -1.48
USH1C-210ENST00000534556 NEK4P51957 841 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 ANAPC15P60006 121 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 FGD1P98174 961 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 PTPN11Q06124 597 aaPredicted RBP5.79□□□□□ -1.48
USH1C-210ENST00000534556 RBL2Q08999 1139 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 MKRN4PQ13434 485 aaPredicted RBP5.79□□□□□ -1.48
USH1C-210ENST00000534556 PTGISQ16647 500 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 CEP55Q53EZ4 464 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 ZNF618Q5T7W0 954 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 XRRA1Q6P2D8 792 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 KCNV1Q6PIU1 500 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 ABHD15Q6UXT9 468 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 RUFY4Q6ZNE9 571 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 OTOP2Q7RTS6 562 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 TMCO2Q7Z6W1 182 aaPredicted RBP5.79□□□□□ -1.48
USH1C-210ENST00000534556 DEFB128Q7Z7B8 93 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 SERINC5Q86VE9 423 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 NSUN7Q8NE18 718 aaKnown RBP5.79□□□□□ -1.48
USH1C-210ENST00000534556 TRAPPC12Q8WVT3 735 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 RNPC3Q96LT9 517 aaKnown RBP5.79□□□□□ -1.48
USH1C-210ENST00000534556 FAM161BQ96MY7 647 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 MPHOSPH6Q99547 160 aaKnown RBP5.79□□□□□ -1.48
USH1C-210ENST00000534556 TUT1Q9H6E5 874 aaKnown RBP5.79□□□□□ -1.48
USH1C-210ENST00000534556 MLXIPQ9HAP2 919 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 SETD4Q9NVD3 440 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 MTMR10Q9NXD2 777 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 PRKAG2Q9UGJ0 569 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 YBX2Q9Y2T7 364 aaKnown RBP5.79□□□□□ -1.48
USH1C-210ENST00000534556 BDP1A6H8Y1 2624 aa5.79□□□□□ -1.48
USH1C-210ENST00000534556 TCHHQ07283 1943 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 IGKV6D-21A0A0A0MT36 114 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 SPDYE3A6NKU9 549 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 hCG_1984214I3L0E3 225 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 DDX39AO00148 427 aaKnown RBP5.78□□□□□ -1.48
USH1C-210ENST00000534556 ZNF862O60290 1169 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 TDP2O95551 362 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 FOSP01100 380 aaPredicted RBP5.78□□□□□ -1.48
USH1C-210ENST00000534556 MARK3P27448 753 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 CIITAP33076 1130 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 FOSBP53539 338 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 RABGGTBP53611 331 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 ACTR2P61160 394 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 SSRP1Q08945 709 aaKnown RBP5.78□□□□□ -1.48
USH1C-210ENST00000534556 NR5A1Q13285 461 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 AP3B2Q13367 1082 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 PPIGQ13427 754 aaKnown RBP eCLIP5.78□□□□□ -1.48
USH1C-210ENST00000534556 MTMR1Q13613 665 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 NEDD9Q14511 834 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 UGCGQ16739 394 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 GNPTABQ3T906 1256 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 B3GNT9Q6UX72 402 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 PLA2G4DQ86XP0 818 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 CCDC60Q8IWA6 550 aaPredicted RBP5.78□□□□□ -1.48
USH1C-210ENST00000534556 REXO1Q8N1G1 1221 aaKnown RBP5.78□□□□□ -1.48
USH1C-210ENST00000534556 DEFB123Q8N688 67 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 ZNF713Q8N859 430 aaPredicted RBP5.78□□□□□ -1.48
USH1C-210ENST00000534556 LMBR1Q8WVP7 490 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 HERVK_113Q902F9 699 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 TNFRSF25Q93038 417 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 GTF3C6Q969F1 213 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 MBOAT7Q96N66 472 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 PHF20Q9BVI0 1012 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 PBX4Q9BYU1 374 aa5.78□□□□□ -1.48
USH1C-210ENST00000534556 NFASCO94856 1347 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 CCDC196A0A1B0GTZ2 297 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 LCHNA4D1U4 455 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 TMEM150BA6NC51 233 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 EPOPA6NHQ4 379 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 PITPNM1O00562 1244 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 MSH4O15457 936 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 SLC37A4O43826 429 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 STBD1O95210 358 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 DEXIO95424 95 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 FGBP02675 491 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 CHRNA1P02708 482 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 CXCL10P02778 98 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 DNAJB2P25686 324 aa5.77□□□□□ -1.49
USH1C-210ENST00000534556 RBM25P49756 843 aaKnown RBP5.77□□□□□ -1.49
USH1C-210ENST00000534556 DEFB103AP81534 67 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms