RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 CDH23Q9H251 3354 aa17.66■□□□□ 0.42
CPSF1-211ENST00000533492 TLL1O43897 1013 aa17.65■□□□□ 0.42
CPSF1-211ENST00000533492 LGR5O75473 907 aa17.65■□□□□ 0.42
CPSF1-211ENST00000533492 RPS6KB1P23443 525 aa17.65■□□□□ 0.42
CPSF1-211ENST00000533492 HOXC8P31273 242 aa17.65■□□□□ 0.42
CPSF1-211ENST00000533492 ZNF76P36508 570 aa17.65■□□□□ 0.42
CPSF1-211ENST00000533492 ARHGAP4P98171 946 aa17.65■□□□□ 0.42
CPSF1-211ENST00000533492 AKAP17AQ02040 695 aaKnown RBP17.65■□□□□ 0.42
CPSF1-211ENST00000533492 TRAF7Q6Q0C0 670 aa17.65■□□□□ 0.42
CPSF1-211ENST00000533492 ANO3Q9BYT9 981 aa17.65■□□□□ 0.42
CPSF1-211ENST00000533492 GSTTP1A0A1W2PQM5 241 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 CAND2O75155 1236 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 SCG2P13521 617 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 AP3B2Q13367 1082 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 ADGRE1Q14246 886 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 MBTPS1Q14703 1052 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 PFKFB3Q16875 520 aaPredicted RBP17.64■□□□□ 0.41
CPSF1-211ENST00000533492 CCDC12Q8WUD4 166 aaPredicted RBP17.64■□□□□ 0.41
CPSF1-211ENST00000533492 SDF4Q9BRK5 362 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 SMARCAD1Q9H4L7 1026 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 CERS4Q9HA82 394 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 JPH1Q9HDC5 661 aaPredicted RBP17.64■□□□□ 0.41
CPSF1-211ENST00000533492 KCNH7Q9NS40 1196 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 TMEM260Q9NX78 707 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 ERAP1Q9NZ08 941 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 NRCAMQ92823 1304 aa17.64■□□□□ 0.41
CPSF1-211ENST00000533492 CHD9Q3L8U1 2897 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 CTSHP09668 335 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 MARK3P27448 753 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 DEFB103AP81534 67 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 CCDC85BQ15834 202 aaPredicted RBP17.63■□□□□ 0.41
CPSF1-211ENST00000533492 CEP55Q53EZ4 464 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 JAKMIP3Q5VZ66 844 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 FBXL16Q8N461 479 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 USP38Q8NB14 1042 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 DBF4BQ8NFT6 615 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 CYP2W1Q8TAV3 490 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 LMBR1Q8WVP7 490 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 C6orf50Q9HD87 102 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 SLC9A2Q9UBY0 812 aa17.63■□□□□ 0.41
CPSF1-211ENST00000533492 UNC80Q8N2C7 3258 aa17.62■□□□□ 0.41
CPSF1-211ENST00000533492 PRPF3O43395 683 aaKnown RBP17.62■□□□□ 0.41
CPSF1-211ENST00000533492 EPB41L2O43491 1005 aaKnown RBP17.62■□□□□ 0.41
CPSF1-211ENST00000533492 ARP10275 920 aa17.62■□□□□ 0.41
CPSF1-211ENST00000533492 SREBF1P36956 1147 aa17.62■□□□□ 0.41
CPSF1-211ENST00000533492 TAP1Q03518 808 aa17.62■□□□□ 0.41
CPSF1-211ENST00000533492 PPFIA1Q13136 1202 aa17.62■□□□□ 0.41
CPSF1-211ENST00000533492 TCTN1Q2MV58 587 aa17.62■□□□□ 0.41
CPSF1-211ENST00000533492 TMCO2Q7Z6W1 182 aaPredicted RBP17.62■□□□□ 0.41
CPSF1-211ENST00000533492 ARNTL2Q8WYA1 636 aa17.62■□□□□ 0.41
CPSF1-211ENST00000533492 SEPT8Q92599 483 aa17.62■□□□□ 0.41
CPSF1-211ENST00000533492 TNPO1Q92973 898 aaKnown RBP17.62■□□□□ 0.41
CPSF1-211ENST00000533492 AGXT2Q9BYV1 514 aa17.62■□□□□ 0.41
CPSF1-211ENST00000533492 AZI2Q9H6S1 392 aa17.62■□□□□ 0.41
CPSF1-211ENST00000533492 EYSQ5T1H1 3165 aa17.62■□□□□ 0.41
CPSF1-211ENST00000533492 GTPBP6O43824 516 aaPredicted RBP17.61■□□□□ 0.41
CPSF1-211ENST00000533492 GJB5O95377 273 aa17.61■□□□□ 0.41
CPSF1-211ENST00000533492 CLK2P49760 499 aaKnown RBP17.61■□□□□ 0.41
CPSF1-211ENST00000533492 ADAM17P78536 824 aa17.61■□□□□ 0.41
CPSF1-211ENST00000533492 MCTP2Q6DN12 878 aa17.61■□□□□ 0.41
CPSF1-211ENST00000533492 FAM117BQ6P1L5 589 aa17.61■□□□□ 0.41
CPSF1-211ENST00000533492 TAF2Q6P1X5 1199 aa17.61■□□□□ 0.41
CPSF1-211ENST00000533492 RUFY3Q7L099 469 aa17.61■□□□□ 0.41
CPSF1-211ENST00000533492 RSPH3Q86UC2 560 aa17.61■□□□□ 0.41
CPSF1-211ENST00000533492 MICALL1Q8N3F8 863 aa17.61■□□□□ 0.41
CPSF1-211ENST00000533492 PHKBQ93100 1093 aa17.61■□□□□ 0.41
CPSF1-211ENST00000533492 RAD9AQ99638 391 aa17.61■□□□□ 0.41
CPSF1-211ENST00000533492 COL25A1Q9BXS0 654 aaPredicted RBP17.61■□□□□ 0.41
CPSF1-211ENST00000533492 NFASCO94856 1347 aa17.61■□□□□ 0.41
CPSF1-211ENST00000533492 PRUNE2Q8WUY3 3088 aa17.61■□□□□ 0.41
CPSF1-211ENST00000533492 ESYT2A0FGR8 921 aa17.6■□□□□ 0.41
CPSF1-211ENST00000533492 RFXAPO00287 272 aa17.6■□□□□ 0.41
CPSF1-211ENST00000533492 MEIS1O00470 390 aa17.6■□□□□ 0.41
CPSF1-211ENST00000533492 AMHP03971 560 aa17.6■□□□□ 0.41
CPSF1-211ENST00000533492 GNA11P29992 359 aa17.6■□□□□ 0.41
CPSF1-211ENST00000533492 CCT2P78371 535 aaKnown RBP17.6■□□□□ 0.41
CPSF1-211ENST00000533492 GRIK4Q16099 956 aa17.6■□□□□ 0.41
CPSF1-211ENST00000533492 PLEKHG4Q58EX7 1191 aa17.6■□□□□ 0.41
CPSF1-211ENST00000533492 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.6■□□□□ 0.41
CPSF1-211ENST00000533492 MYOCDQ8IZQ8 938 aa17.6■□□□□ 0.41
CPSF1-211ENST00000533492 ZMYND12Q9H0C1 365 aa17.6■□□□□ 0.41
CPSF1-211ENST00000533492 AGO4Q9HCK5 861 aaKnown RBP17.6■□□□□ 0.41
CPSF1-211ENST00000533492 CYP46A1Q9Y6A2 500 aa17.6■□□□□ 0.41
CPSF1-211ENST00000533492 PDIA3P30101 505 aaKnown RBP17.59■□□□□ 0.41
CPSF1-211ENST00000533492 ACTR2P61160 394 aa17.59■□□□□ 0.41
CPSF1-211ENST00000533492 IGBP1P78318 339 aa17.59■□□□□ 0.41
CPSF1-211ENST00000533492 PKN1Q16512 942 aa17.59■□□□□ 0.41
CPSF1-211ENST00000533492 NIPA1Q7RTP0 329 aa17.59■□□□□ 0.41
CPSF1-211ENST00000533492 PLA2G4DQ86XP0 818 aa17.59■□□□□ 0.41
CPSF1-211ENST00000533492 REXO1Q8N1G1 1221 aaKnown RBP17.59■□□□□ 0.41
CPSF1-211ENST00000533492 SLC26A6Q9BXS9 759 aa17.59■□□□□ 0.41
CPSF1-211ENST00000533492 RNF26Q9BY78 433 aaPredicted RBP17.59■□□□□ 0.41
CPSF1-211ENST00000533492 TSPYL2Q9H2G4 693 aaPredicted RBP17.59■□□□□ 0.41
CPSF1-211ENST00000533492 ZSWIM6Q9HCJ5 1215 aa17.59■□□□□ 0.41
CPSF1-211ENST00000533492 TUBE1Q9UJT0 475 aa17.59■□□□□ 0.41
CPSF1-211ENST00000533492 TRPC6Q9Y210 931 aa17.59■□□□□ 0.41
CPSF1-211ENST00000533492 NID2Q14112 1375 aa17.58■□□□□ 0.4
CPSF1-211ENST00000533492 LCHNA4D1U4 455 aa17.58■□□□□ 0.4
CPSF1-211ENST00000533492 RRN3P2A6NIE6 340 aa17.58■□□□□ 0.4
CPSF1-211ENST00000533492 PPFIA3O75145 1194 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms