RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 BICD2Q8TD16 824 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 GPT2Q8TD30 523 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 MAGEC3Q8TD91 643 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 ASB11Q8WXH4 323 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 RSPH1Q8WYR4 309 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 PPP1R14AQ96A00 147 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 CCDC47Q96A33 483 aaKnown RBP6.25□□□□□ -1.41
CD44-236ENST00000533222 MISP3Q96FF7 219 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 SEZ6LQ9BYH1 1024 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 FOXP3Q9BZS1 431 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 ASCC2Q9H1I8 757 aaPredicted RBP6.25□□□□□ -1.41
CD44-236ENST00000533222 LUC7LQ9NQ29 371 aaKnown RBP6.25□□□□□ -1.41
CD44-236ENST00000533222 IL20Q9NYY1 176 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 SPATA7Q9P0W8 599 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 SIRPGQ9P1W8 387 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 WHRNQ9P202 907 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 CGGBP1Q9UFW8 167 aaPredicted RBP6.25□□□□□ -1.41
CD44-236ENST00000533222 ADAMTS6Q9UKP5 1117 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 ACAD8Q9UKU7 415 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 ANGEL1Q9UNK9 670 aaKnown RBP6.25□□□□□ -1.41
CD44-236ENST00000533222 ATP6V0A2Q9Y487 856 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 FHOD1Q9Y613 1164 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 SLC30A1Q9Y6M5 507 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 GOLGA3Q08378 1498 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 EVC2Q86UK5 1308 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 ATXN2Q99700 1313 aaKnown RBP6.25□□□□□ -1.41
CD44-236ENST00000533222 SCAF11Q99590 1463 aaKnown RBP6.24□□□□□ -1.41
CD44-236ENST00000533222 PIK3R4Q99570 1358 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 FKTNO75072 461 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 DDIT3P35638 169 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 EGR3Q06889 387 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 PABPC4Q13310 644 aaKnown RBP eCLIP6.24□□□□□ -1.41
CD44-236ENST00000533222 ARTNQ5T4W7 220 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 SYNE3Q6ZMZ3 975 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 EEPD1Q7L9B9 569 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 SPATA21Q7Z572 469 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 MYLK4Q86YV6 388 aaPredicted RBP6.24□□□□□ -1.41
CD44-236ENST00000533222 MFN1Q8IWA4 741 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 C10orf67Q8IYJ2 551 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 STK11IPQ8N1F8 1099 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 USHBP1Q8N6Y0 703 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 ZFAND2BQ8WV99 257 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 DEPDC7Q96QD5 511 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 UIMC1Q96RL1 719 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 MCMBPQ9BTE3 642 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 UBXN6Q9BZV1 441 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 GBP3Q9H0R5 595 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 ZSCAN16Q9H4T2 348 aaPredicted RBP6.24□□□□□ -1.41
CD44-236ENST00000533222 IKBKGQ9Y6K9 419 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 SCINQ9Y6U3 715 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 MAPK8IP3Q9UPT6 1336 aa6.24□□□□□ -1.41
CD44-236ENST00000533222 CECR2Q9BXF3 1484 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 NLRP1Q9C000 1473 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 ROCK1Q13464 1354 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 PLEKHH1Q9ULM0 1364 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 CCDC194A0A1B0GVG4 234 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 PABPN1LA6NDY0 278 aaKnown RBP6.23□□□□□ -1.41
CD44-236ENST00000533222 P4HA2O15460 535 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 PDPK1O15530 556 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 AHCYL1O43865 530 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 PLIN1O60240 522 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 DIAPH1O60610 1272 aaKnown RBP6.23□□□□□ -1.41
CD44-236ENST00000533222 SYPP08247 313 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 IFNGR1P15260 489 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 RRP1P56182 461 aaKnown RBP6.23□□□□□ -1.41
CD44-236ENST00000533222 TEKQ02763 1124 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 ZP2Q05996 745 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 NCBP1Q09161 790 aaKnown RBP6.23□□□□□ -1.41
CD44-236ENST00000533222 NBPF8Q3BBV2 869 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 SV2CQ496J9 727 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 CCDC38Q502W7 563 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 WLSQ5T9L3 541 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 MFSD4BQ5TF39 518 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 ANGEL2Q5VTE6 544 aaKnown RBP6.23□□□□□ -1.41
CD44-236ENST00000533222 KCNV1Q6PIU1 500 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 GBP6Q6ZN66 633 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 KRT77Q7Z794 578 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 ARHGEF25Q86VW2 580 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 ZNF227Q86WZ6 799 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 GAS2L3Q86XJ1 694 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 MAB21L3Q8N8X9 362 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 SMYD1Q8NB12 490 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 TEKT4Q8WW24 435 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 SRPK1Q96SB4 655 aaKnown RBP6.23□□□□□ -1.41
CD44-236ENST00000533222 OSBPL9Q96SU4 736 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 NAP1L3Q99457 506 aaPredicted RBP6.23□□□□□ -1.41
CD44-236ENST00000533222 APBA2Q99767 749 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 ZSWIM4Q9H7M6 989 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 TOMM22Q9NS69 142 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 PFDN2Q9UHV9 154 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 NRBP1Q9UHY1 535 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 MYO6Q9UM54 1294 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 LZTS1Q9Y250 596 aa6.23□□□□□ -1.41
CD44-236ENST00000533222 DNAJC25-GNG10A0A024R161 153 aa6.22□□□□□ -1.41
CD44-236ENST00000533222 TMEM82A0PJX8 343 aa6.22□□□□□ -1.41
CD44-236ENST00000533222 TMEM232C9JQI7 657 aa6.22□□□□□ -1.41
CD44-236ENST00000533222 SLC27A2O14975 620 aa6.22□□□□□ -1.41
CD44-236ENST00000533222 ERC2O15083 957 aa6.22□□□□□ -1.41
CD44-236ENST00000533222 CEP104O60308 925 aa6.22□□□□□ -1.41
CD44-236ENST00000533222 PPM1BO75688 479 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms