RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 RWDD3Q9Y3V2 267 aa9.73□□□□□ -0.85
CD44-232ENST00000531118 MYO10Q9HD67 2058 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 GSG1L2A8MUP6 293 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 HAS3O00219 553 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 GLP2RO95838 553 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 RB1P06400 928 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 TSPY3P0CV98 308 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 TSPY8P0CW00 308 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 CASTP20810 708 aaKnown RBP9.72□□□□□ -0.85
CD44-232ENST00000531118 ZNF200P98182 395 aaPredicted RBP9.72□□□□□ -0.85
CD44-232ENST00000531118 CCDC62Q6P9F0 684 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 GIMAP6Q6P9H5 292 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 ADGRD2Q7Z7M1 963 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 SPNS2Q8IVW8 549 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 ZNF444Q8N0Y2 327 aaPredicted RBP9.72□□□□□ -0.85
CD44-232ENST00000531118 ANKK1Q8NFD2 765 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 DNERQ8NFT8 737 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 SEPT8Q92599 483 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 BOLA2Q9H3K6 86 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 TMEM134Q9H6X4 195 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 ZNF287Q9HBT7 754 aa9.72□□□□□ -0.85
CD44-232ENST00000531118 BARX2Q9UMQ3 279 aaPredicted RBP9.72□□□□□ -0.85
CD44-232ENST00000531118 RSPH10B2B2RC85 870 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 IFIT2P09913 472 aaKnown RBP9.71□□□□□ -0.86
CD44-232ENST00000531118 RSPH10BP0C881 870 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 BMPR1AP36894 532 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 THPOP40225 353 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 TDO2P48775 406 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 RPS6P62753 249 aaKnown RBP9.71□□□□□ -0.86
CD44-232ENST00000531118 AMHR2Q16671 573 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 DGKDQ16760 1214 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 KIAA0753Q2KHM9 967 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 CCDC96Q2M329 555 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 RCSD1Q6JBY9 416 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 RNF207Q6ZRF8 634 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 CHST3Q7LGC8 479 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 SERINC5Q86VE9 423 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 CLASRPQ8N2M8 674 aaKnown RBP9.71□□□□□ -0.86
CD44-232ENST00000531118 EFHBQ8N7U6 833 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 TMEM105Q8N8V8 129 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 CLEC4DQ8WXI8 215 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 PPP2R3CQ969Q6 453 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 RMDN1Q96DB5 314 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 RPGRIP1Q96KN7 1286 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 RIPOR3Q96MK2 946 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 STRBPQ96SI9 672 aaKnown RBP9.71□□□□□ -0.86
CD44-232ENST00000531118 HAUS7Q99871 368 aa9.71□□□□□ -0.86
CD44-232ENST00000531118 TRIM66O15016 1216 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 CTSHP09668 335 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 CAMK1Q14012 370 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 LY6KQ17RY6 165 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 HSP90AB4PQ58FF6 505 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 ZSCAN25Q6NSZ9 544 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 DGLUCYQ7Z3D6 616 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 ITPRIPQ8IWB1 547 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 DHX37Q8IY37 1157 aaKnown RBP9.7□□□□□ -0.86
CD44-232ENST00000531118 CLP1Q92989 425 aaKnown RBP9.7□□□□□ -0.86
CD44-232ENST00000531118 IL17RAQ96F46 866 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 OSBPL7Q9BZF2 842 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 MTMR7Q9Y216 660 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 DOCK5Q9H7D0 1870 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 FANCMQ8IYD8 2048 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 KAT6AQ92794 2004 aa9.7□□□□□ -0.86
CD44-232ENST00000531118 USP24Q9UPU5 2620 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 PRKCSHP14314 528 aaPredicted RBP9.69□□□□□ -0.86
CD44-232ENST00000531118 ATF7P17544 494 aaPredicted RBP9.69□□□□□ -0.86
CD44-232ENST00000531118 ATP5JP18859 108 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 SLC16A2P36021 539 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 NRIP1P48552 1158 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 SYDE2Q5VT97 1194 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 ZKSCAN2Q63HK3 967 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 ZBTB33Q86T24 672 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 WDR19Q8NEZ3 1342 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 PPTC7Q8NI37 304 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 DCAF4Q8WV16 495 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 SUSD6Q92537 303 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 APBB2Q92870 758 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 WNT2BQ93097 391 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 EMID1Q96A84 441 aaPredicted RBP9.69□□□□□ -0.86
CD44-232ENST00000531118 KIF1BPQ96EK5 621 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 CNTNAP3BQ96NU0 1288 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 PLVAPQ9BX97 442 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 CNTNAP3Q9BZ76 1288 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 STX8Q9UNK0 236 aa9.69□□□□□ -0.86
CD44-232ENST00000531118 DENND4AQ7Z401 1863 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 CHD6Q8TD26 2715 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 CHD8Q9HCK8 2581 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 B4DLN1 442 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 GPAA1O43292 621 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 CAND2O75155 1236 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 HOXD8P13378 290 aaPredicted RBP9.68□□□□□ -0.86
CD44-232ENST00000531118 DNAJB1P25685 340 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 HOXC8P31273 242 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 CLCN1P35523 988 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 MRPL12P52815 198 aaKnown RBP9.68□□□□□ -0.86
CD44-232ENST00000531118 TFAP4Q01664 338 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 TTBK2Q6IQ55 1244 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 BTNL9Q6UXG8 535 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 SEPT14Q6ZU15 432 aa9.68□□□□□ -0.86
CD44-232ENST00000531118 FTSJ3Q8IY81 847 aaKnown RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms